Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001771-TA|BGIBMGA001771-PA|undefined
         (282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    30   0.43 
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    27   3.0  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.0  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   5.3  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   7.0  
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    26   7.0  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 24  SLATAAEHVRDARRALQHYHSVRRKGKKQKINPAHQAKMQLVTEKIGELTTVMNTTAKEL 83
           S  T+   ++D   +L+   S     +K+  + A + ++Q+  E + +LT++     +  
Sbjct: 443 SYITSNSQLKDEITSLKQTVSESEAERKRLFSSAQEKQLQM-KETVNKLTSLQEQNNE-- 499

Query: 84  RVAEKKMSEYSLKLEQCERQLAEVRALAPPQPQDEE 119
              ++++ E    L+  E +L E+R L   Q QD +
Sbjct: 500 --FDRQLKEQEEDLQNKEEELTELRKLLREQTQDSQ 533


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 39  LQHYHSVRRKGKKQKINPAHQAKMQLVTEKIGELTTVMNTTAKELRVAEKKMSEYSL 95
           ++ Y +    G  Q I+ ++  K ++   KI + T     T  E+RV+ K   EYS+
Sbjct: 104 VERYKNKLENGVDQ-IHHSNNEKAKIRFSKIEKYTKETRPTVSEVRVSTKDKKEYSM 159


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 50  KKQKINPAHQAKMQLVTEKIGELTTVMNTTAKELRVAEKKMSEYSLKLEQCERQLAE 106
           K++      Q+K+ +   +I +    MN    +L+  EK +    LK+E+ E+ L E
Sbjct: 200 KREAALEEFQSKLLIRENEINKRELKMNGKEDDLKKREKDLENRLLKVEEHEKSLNE 256


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/71 (22%), Positives = 31/71 (43%)

Query: 15  CGERDGLSVSLATAAEHVRDARRALQHYHSVRRKGKKQKINPAHQAKMQLVTEKIGELTT 74
           C     ++V    A    + A RA+  YHS   K ++++     + ++Q + E   E   
Sbjct: 276 CAHGREINVRTKNAQARAQKANRAVLAYHSHIEKEEQRRAERNAKQRLQALKENDEEAYL 335

Query: 75  VMNTTAKELRV 85
            +   AK+ R+
Sbjct: 336 KLIDQAKDTRI 346


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 58  HQAKMQLVTEKIGELTTVMNTTAKELRVAEKKMSEYSLKLEQCERQLAEVRA 109
           ++ K+Q  T+++  L T ++    E R +E  +  +   +E C   L E  A
Sbjct: 832 YREKIQTETQRLSSLQTELSRLRDEKRNSEVDIERHRQTVESCTNILREKEA 883


>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 96  KLEQCERQLAEVRALAPPQPQDEE 119
           K  +  + L E+ ALAP QP+D E
Sbjct: 116 KSGELHKILKEINALAPEQPKDSE 139


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.123    0.335 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 922,811
Number of Sequences: 5004
Number of extensions: 27160
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 8
length of query: 282
length of database: 2,362,478
effective HSP length: 72
effective length of query: 210
effective length of database: 2,002,190
effective search space: 420459900
effective search space used: 420459900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)