GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001771-TA|BGIBMGA001771-PA|undefined
         (282 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   4.5  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   7.8  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B
          protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 43 HSVRRKGKKQKINPAHQA 60
          H VR  G K+K+ P  Q+
Sbjct: 23 HGVRAPGAKKKVGPIDQS 40


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A
          protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 43 HSVRRKGKKQKINPAHQA 60
          H VR  G K+K+ P  Q+
Sbjct: 23 HGVRAPGAKKKVGPIDQS 40


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 27  TAAEHVRDARRALQHYHSVRRKGKKQKINPAHQAKMQLVTEKI 69
           T  E    AR  L+H+ ++R+K +K ++         L+  K+
Sbjct: 370 TREEIHEKARENLKHHANLRQKNQKGEVTVLEIEDWVLLKNKV 412


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.123    0.335 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,730
Number of Sequences: 317
Number of extensions: 1275
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 282
length of database: 114,650
effective HSP length: 56
effective length of query: 226
effective length of database: 96,898
effective search space: 21898948
effective search space used: 21898948
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)