GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001771-TA|BGIBMGA001771-PA|undefined
         (282 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   7.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   7.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.1  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   9.3  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 81  KELRVAEKKMSEYSLKLEQCERQLAEVR 108
           K LR   KKM+  SL   Q + + AEVR
Sbjct: 252 KMLREQAKKMNVKSLVSNQDKERSAEVR 279


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/26 (42%), Positives = 12/26 (46%)

Query: 38  ALQHYHSVRRKGKKQKINPAHQAKMQ 63
           A    H   R GKK K N A  A +Q
Sbjct: 361 AAHKMHGRGRSGKKSKFNAAVAAAVQ 386


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 81  KELRVAEKKMSEYSLKLEQCERQLAEVR 108
           K LR   KKM+  SL   Q + + AEVR
Sbjct: 252 KMLREQAKKMNVKSLVSNQDKERSAEVR 279


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 146 EKQKQNDAYISELISLNYESVLPESVPAIEEL 177
           ++Q+ N+ Y S + + +Y+   P S    +EL
Sbjct: 124 QQQQHNNGYASPMSTSSYDPYSPNSKIGRDEL 155


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 253 EQAIAQMNQVAKGSNKEKASSLASDHAQL 281
           ++AI++   +AKG N E A      +A+L
Sbjct: 109 QKAISECKGIAKGDNCEYAYRFNKCYAEL 137


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.123    0.335 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,062
Number of Sequences: 429
Number of extensions: 1764
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 282
length of database: 140,377
effective HSP length: 57
effective length of query: 225
effective length of database: 115,924
effective search space: 26082900
effective search space used: 26082900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)