GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001769-TA|BGIBMGA001769-PA|undefined
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    34   0.024
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    29   1.2  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    27   2.8  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   6.4  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    26   6.4  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 61  IDLEYKEGVEAPALGQYLLPLLSEQVSSANNAPERFLIRHEDILQLLASAEENARDSNPL 120
           ID E+   V    + Q ++  L++  SS N   E FL   E I QL+A A E   DS   
Sbjct: 567 IDTEFST-VSHSLIFQRIIYRLTQSASSDNALREWFLHNIESIDQLIAQAHEFCIDSGSR 625

Query: 121 ADEVPLQ 127
             E+PL+
Sbjct: 626 VQELPLE 632


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 163 DVAVRE-FEPVPEWLLGVYHSWC-EISALVYTLIGADMSVE 201
           D+ +RE  E  P +   +YHSWC  ++ALV   IG  +  E
Sbjct: 782 DMLLREKIESAPRYDTLIYHSWCYYVAALVLWSIGFALDEE 822


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 67  EGVEAPALGQYLLPLLSEQVSSANNAPERFLIRHEDILQLLASAEENARDSNPLA 121
           +G+ A ALG+   P  SE+ +  +   E       +++Q   S EEN  D N ++
Sbjct: 21  QGINASALGRARPPRQSEESAGQSTGTE------SEVIQTPTSVEENNEDENSMS 69


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 109 SAEENARDSNPLADEVPLQP-HHALSHMDSFEFEEPPVSPD 148
           S+  N   S+P   E+P  P HHA + +DS     PP S D
Sbjct: 63  SSNVNKNSSSP-ERELPTSPSHHANTEIDSSSSMLPPPSSD 102


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 273 LPRLRAVLMSHEDAGATIVYEQLIRLAK 300
           LP   A+  +HE  G+T  Y Q +R AK
Sbjct: 19  LPTSNAINSNHESNGSTFSYVQSLRRAK 46


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.133    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,276,696
Number of Sequences: 5004
Number of extensions: 51597
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 5
length of query: 327
length of database: 2,362,478
effective HSP length: 73
effective length of query: 254
effective length of database: 1,997,186
effective search space: 507285244
effective search space used: 507285244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)