Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001769-TA|BGIBMGA001769-PA|undefined
(327 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0626 + 26233178-26233233,26234083-26234284,26234800-262349... 32 0.55
03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421 30 2.9
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816... 29 3.9
03_02_0764 + 10990220-10992410,10992809-10993616,10994734-109949... 29 5.1
02_01_0577 + 4280590-4281225,4281749-4282102,4282214-4282412,428... 29 5.1
10_08_0666 - 19691985-19692216,19692327-19692404,19692508-196928... 29 6.8
02_05_0469 + 29297209-29297527,29297847-29297961,29298060-292982... 29 6.8
11_06_0638 - 25719109-25719334,25719485-25719510,25719974-257200... 28 8.9
11_03_0097 + 9967351-9967969,9968180-9968259 28 8.9
08_01_0089 - 646310-646397,646566-647932 28 8.9
06_03_1373 + 29667871-29668782,29668872-29669851,29670156-296703... 28 8.9
06_03_1168 - 28114656-28114721,28114800-28114889,28115139-281168... 28 8.9
>03_05_0626 + 26233178-26233233,26234083-26234284,26234800-26234968,
26235767-26238768
Length = 1142
Score = 32.3 bits (70), Expect = 0.55
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 85 QVSSANNAPERF--LIRHEDILQLLASAEENARD--SNPLADEV-PLQPHHALSHMDSFE 139
Q +SAN E +++ +++Q ASA+ D S P A E+ P+QP ALS D +
Sbjct: 930 QENSANGRDESMKPVVQETNLIQQSASAKSCTDDISSAPPAQEIKPVQPPKALSSRDRLK 989
Query: 140 FEEPPVSPDEEAALLHYICEAETDVAVREFE 170
+ ++ A L E +T A EFE
Sbjct: 990 IQRESLAHKRNALKLRR--EGKTAEADAEFE 1018
>03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421
Length = 927
Score = 29.9 bits (64), Expect = 2.9
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 66 KEGVEAPALGQYLLPLLSEQVSSANNAPERFLIRHEDILQLLASAEENARDSNPLAD--- 122
+E VE + ++P + E+VS +N +I + ++ L+ E D N A+
Sbjct: 367 EEEVETAEEEEIVVPEVIEEVSEDDNQLSSLVIWYASLIVFLSVTEAVPEDDNRSAEVDT 426
Query: 123 --EVPL--------QPHHALSHMDSFEFEEP--PVS-PDEEAALLHYICEAETDVAVRE 168
EV + Q H + +S EFEEP P++ PDE+ L + ETD +E
Sbjct: 427 NCEVSIGSEICEREQDDHVVPFHESAEFEEPTDPLAYPDEQPLPLESL--HETDPTAQE 483
>06_03_1303 +
29180837-29181205,29181289-29181306,29181337-29181622,
29185008-29186284,29186499-29187005
Length = 818
Score = 29.5 bits (63), Expect = 3.9
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 184 CEISALVYTLIGADMSVERVSEDWVYRARFGCHCRLCLC-TANNSAALAVFIRDLVWSLA 242
C +S + + A +++ R S+ YR R C L A N AA+ VWSL
Sbjct: 317 CSLSLTLAAGLWAALAILRASQ---YRQRHRCVTYALLAGAALNDAAILAAHAFSVWSLV 373
Query: 243 HGG-LSAAAVGVVRSLGVQAGQTTCHLAHWDLPRL 276
HG LS +V +V+ A +L + L +L
Sbjct: 374 HGDWLSWCSVMLVKRRRWSASMAQSNLVTFCLRKL 408
>03_02_0764 +
10990220-10992410,10992809-10993616,10994734-10994968,
10995028-10995169,10997365-10997444,10997636-10997776
Length = 1198
Score = 29.1 bits (62), Expect = 5.1
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 117 SNPLADEVPLQPHHALSHMDSFEFEEPPVSPDEEAALLHYICEA---ETDVAVREFEPV- 172
S AD + L PHH++ +DS PPVS +A LL A E A RE +
Sbjct: 137 SENTADLLDLSPHHSVPSLDS-SAVPPPVSLGADARLLFAPSSAVLLERAFAAREISLLN 195
Query: 173 PEWL 176
P W+
Sbjct: 196 PLWI 199
>02_01_0577 +
4280590-4281225,4281749-4282102,4282214-4282412,
4284991-4285204,4285299-4285401,4285481-4285639
Length = 554
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 258 GVQAGQTTCHLAHWDLPRLRAVLMSHEDAGATIVYEQLIRLAKESKTTEQIVDKICLCRS 317
G++AG T + +DL L ++ H A V ++ +AK + T + + I + S
Sbjct: 247 GLRAGSTIVIMRKFDLGALVDLVRKHNITIAPFVPPIVVEIAKSPRVTAEDLASIRMVMS 306
Query: 318 YDQPMDKE 325
PM K+
Sbjct: 307 GAAPMGKD 314
>10_08_0666 -
19691985-19692216,19692327-19692404,19692508-19692837,
19692913-19693158,19693224-19693483,19694469-19695023
Length = 566
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 176 LLGVYHSWCE---ISALVYTLIGAD 197
L+G YH WCE AL Y L+ AD
Sbjct: 457 LIGAYHDWCEPLPTPALSYDLLHAD 481
>02_05_0469 +
29297209-29297527,29297847-29297961,29298060-29298255,
29298427-29298540,29298695-29298868,29299326-29299520,
29299666-29299788,29299892-29300004,29300117-29300237,
29300363-29300623,29301712-29301921
Length = 646
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 70 EAPALGQYLLPLLSEQVSSANNAPERFLIRHEDI 103
E PA+ Q + LSEQ+S+ N + F R E++
Sbjct: 484 EPPAINQGAITQLSEQISTLNERMDEFTSRVEEL 517
>11_06_0638 -
25719109-25719334,25719485-25719510,25719974-25720058,
25720189-25720320,25720615-25720673,25720742-25721048,
25721572-25721653,25721730-25721863,25721948-25722041,
25722112-25722235,25722497-25722556
Length = 442
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 81 LLSEQVSSANNAPERFLIRHEDILQLLASAEENARDSNPLADEVPLQPHHALSHMDSFEF 140
L+ E+ S +P + RH+ + + + EEN +AD+ QP MD
Sbjct: 309 LIKEKQPSTEFSPGQNSKRHKKVTETSPNGEENQLQQPKIADQ---QPSGHEEQMD---- 361
Query: 141 EEPPVSPDEEAALLH 155
++P + + EA L+H
Sbjct: 362 QQPEKNRNHEAQLIH 376
>11_03_0097 + 9967351-9967969,9968180-9968259
Length = 232
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 118 NPLADEVPLQPHHALSHMDSFEFEEPPVSPDEEAALLHYICEA 160
+P+A+ P+ P + +++ P SPDE A L Y +A
Sbjct: 181 SPVAEPAPVAPSSPAQPIANWKISSPGDSPDEVKARLKYWAQA 223
>08_01_0089 - 646310-646397,646566-647932
Length = 484
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 244 GGLSAAAVGVVRSLGVQAGQTTCHLAHWDLPRLRA 278
GG+ + V+R +TT HL WDLP L A
Sbjct: 6 GGVRVVSRRVIRPELPPEHETTVHLTPWDLPLLTA 40
>06_03_1373 +
29667871-29668782,29668872-29669851,29670156-29670350,
29670460-29670676
Length = 767
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 176 LLGVYHSWCEISAL---VYTLIGADMSVERVSE 205
L+G+YH WCE + Y L+ AD ++ E
Sbjct: 663 LIGMYHDWCESFSTYPRTYDLLHADRLFSKIKE 695
>06_03_1168 -
28114656-28114721,28114800-28114889,28115139-28116877,
28117146-28117227,28117794-28117865,28119412-28119453,
28120352-28120401,28121253-28121372,28121635-28121707,
28121828-28122100,28122413-28122517,28122730-28122859,
28123106-28123356,28123787-28123993,28124185-28124455,
28124808-28124914
Length = 1225
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 131 ALSHMDSFEFEEPPVSPDEEAALLHYICEAETDVAVREFEPVPEWLLGVYHSWCEISAL 189
ALSH+DS + + P + A HY+ E + + P +LG H W E L
Sbjct: 432 ALSHVDS-QVKSIPATAQVAAQQGHYLAECFNKMDQCKEHPEGTSILGNLHPWVESKLL 489
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.133 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,451,000
Number of Sequences: 37544
Number of extensions: 355763
Number of successful extensions: 855
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 14
length of query: 327
length of database: 14,793,348
effective HSP length: 82
effective length of query: 245
effective length of database: 11,714,740
effective search space: 2870111300
effective search space used: 2870111300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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