GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001769-TA|BGIBMGA001769-PA|undefined
         (327 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9220| Best HMM Match : 7tm_1 (HMM E-Value=0.24)                     30   3.0  
SB_25021| Best HMM Match : TP2 (HMM E-Value=2.8)                       29   6.9  

>SB_9220| Best HMM Match : 7tm_1 (HMM E-Value=0.24)
          Length = 189

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 187 SALVYTLIGADMSVERVSEDWVYRARFGCHCRLCLCTANNSAALAV 232
           S L   L  A++ ++ V+  W+ RA  G    L + T NN  A++V
Sbjct: 87  SVLAIPLNNAELWIDFVTNHWICRALRGAQIALPIITMNNLIAISV 132


>SB_25021| Best HMM Match : TP2 (HMM E-Value=2.8)
          Length = 643

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 82  LSEQVSSANNAPERFLIRHEDILQLLASAEENARDSNPLADE 123
           L +  S A+N+ E  +  HE++  +  +A+EN +D N  AD+
Sbjct: 152 LEKDASVADNSSEDKMEAHENMQGVNDAADENMQDVNDAADD 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.133    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,460,897
Number of Sequences: 59808
Number of extensions: 379540
Number of successful extensions: 839
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 837
Number of HSP's gapped (non-prelim): 2
length of query: 327
length of database: 16,821,457
effective HSP length: 82
effective length of query: 245
effective length of database: 11,917,201
effective search space: 2919714245
effective search space used: 2919714245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)