Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001769-TA|BGIBMGA001769-PA|undefined
(327 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical ... 33 0.21
L23648-6|AAA28032.2| 390|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical pr... 30 2.0
U23511-3|AAC46790.1| 636|Caenorhabditis elegans Small protein 6... 30 2.0
AF104017-1|AAD12261.1| 636|Caenorhabditis elegans serine-threon... 30 2.0
AF016441-7|AAB65908.1| 344|Caenorhabditis elegans Hypothetical ... 30 2.0
AC024757-8|AAF59454.2| 215|Caenorhabditis elegans Hypothetical ... 30 2.6
U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical pr... 29 4.5
U41535-6|AAK67248.1| 482|Caenorhabditis elegans Lin-26 related ... 29 6.0
U41535-5|AAK67252.1| 548|Caenorhabditis elegans Lin-26 related ... 29 6.0
AJ130960-1|CAA10264.1| 482|Caenorhabditis elegans LIR-2B protei... 29 6.0
AJ130959-1|CAA10263.1| 548|Caenorhabditis elegans LIR-2A protei... 29 6.0
>AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical
protein C46C11.1 protein.
Length = 943
Score = 33.5 bits (73), Expect = 0.21
Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 3/118 (2%)
Query: 58 PTNIDLEYKEGVEAPALGQYLLPLLSEQVSSANNAPERFLIRHEDILQLLASAEENARDS 117
P + LE E + + L + S N E + +LQ+L+S
Sbjct: 688 PVELGLEATENLVIEEEIEALTSVDEVSTPSTENIQEVHTTKRPRLLQMLSSVTSRESRD 747
Query: 118 NPLADEVPLQPHHALSHMDSFEFEEPPVSPDEEAALLHYICEAETDVAVREFEPVPEW 175
A PLQ LSH S PPV + +L + + A + + +W
Sbjct: 748 TQTAPSTPLQQPKPLSHSSSMNGFNPPV---HKRSLSQSLADTAASTAAYALDNLQDW 802
>L23648-6|AAA28032.2| 390|Caenorhabditis elegans Hypothetical
protein F44B9.5 protein.
Length = 390
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 246 LSAAAVGVVRSLGVQAGQTTCHLAH-WDLPRLRAVLMSHEDAGATIVYEQLIRLAKESKT 304
L A V ++ L V T C L WD+P + + D GAT +QL+ AK+ T
Sbjct: 98 LCANHVSILDHLAVDI-LTPCLLPSVWDIPSIIRWCFGYVDLGATRGRDQLVSRAKQLLT 156
Query: 305 TEQI 308
EQ+
Sbjct: 157 REQM 160
>Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical
protein F54F12.1 protein.
Length = 1217
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 135 MDSFEFEEPPVSPDEEAALLHYICEAETDVAVREFEPVP-EWLLGVYHSWCEISALVYTL 193
+ SF+ ++ + P+E AL + + A + P EW G+Y + ++ +V T
Sbjct: 816 LQSFQLQDTQMMPEESLALSDVVVQGIRVAAAKLCTKSPQEWAEGIYDTIWKLDVMVSTN 875
Query: 194 IGADMSVER 202
A++S R
Sbjct: 876 TQANISQRR 884
>U23511-3|AAC46790.1| 636|Caenorhabditis elegans Small protein 6
protein.
Length = 636
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 97 LIRHEDILQLLASAEENARDSNPLADEVPLQPHHALSHMDSFEFEEPPVSPDEEAALLH- 155
+I HE+ILQ +A+ + DS + + + +H L + + E ++ DE L+H
Sbjct: 313 MINHENILQFVAADIWSEEDS--MTKMLLITDYHELGSLSDYLCREETLTTDEALRLIHS 370
Query: 156 YICEAE 161
IC E
Sbjct: 371 CICGIE 376
>AF104017-1|AAD12261.1| 636|Caenorhabditis elegans serine-threonine
kinase SMA-6 protein.
Length = 636
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 97 LIRHEDILQLLASAEENARDSNPLADEVPLQPHHALSHMDSFEFEEPPVSPDEEAALLH- 155
+I HE+ILQ +A+ + DS + + + +H L + + E ++ DE L+H
Sbjct: 313 MINHENILQFVAADIWSEEDS--MTKMLLITDYHELGSLSDYLCREETLTTDEALRLIHS 370
Query: 156 YICEAE 161
IC E
Sbjct: 371 CICGIE 376
>AF016441-7|AAB65908.1| 344|Caenorhabditis elegans Hypothetical
protein M03F8.1 protein.
Length = 344
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 130 HALSHMDSFEFEEPPVSPDEEAALLHYICEAETDVAVREFEPVPEWLLGVY 180
H S SF+++ P +PDEE L H + V PV +L+G++
Sbjct: 4 HKNSSRHSFQYQHPFRAPDEEEELAHIHITIRYALIVFGLVPVVLFLIGIW 54
>AC024757-8|AAF59454.2| 215|Caenorhabditis elegans Hypothetical
protein Y37E11AL.2 protein.
Length = 215
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 272 DLPRLRAVLMSHEDAGATIVYEQLIRLAKESKTTEQIVDKICLCRSYD---QPMDKE 325
D P+ + S D+ +Y++ I++AKE E++ CL S D +P D E
Sbjct: 132 DAPKEKTAFSSARDSHYENMYQKAIQMAKEMDQMEKVAASPCLDSSQDVELKPADPE 188
>U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical
protein T12E12.3 protein.
Length = 818
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 91 NAPERFLIRHEDILQLLASAEENARDSNPLADEVPLQPHHALSHMD 136
+A E +I +D + +A+ E D L + VPL+ + A+ HMD
Sbjct: 474 DAEEEEVIEEDDESEEVATLEVMDVDDEDLDETVPLESNEAMIHMD 519
>U41535-6|AAK67248.1| 482|Caenorhabditis elegans Lin-26 related
protein 2, isoform b protein.
Length = 482
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 62 DLEYKEGVEAPALGQYLLPLLSEQVSSANNAPER-FLIRHEDI-LQLLASAEENARDSN 118
D E + + P LG PLLS+ +S + + E FL+R E + L SA N SN
Sbjct: 125 DSEPQAVISLPTLGATRAPLLSKLLSDPSTSKENGFLLRKEPVRLARAPSAIRNPNVSN 183
>U41535-5|AAK67252.1| 548|Caenorhabditis elegans Lin-26 related
protein 2, isoform a protein.
Length = 548
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 62 DLEYKEGVEAPALGQYLLPLLSEQVSSANNAPER-FLIRHEDI-LQLLASAEENARDSN 118
D E + + P LG PLLS+ +S + + E FL+R E + L SA N SN
Sbjct: 191 DSEPQAVISLPTLGATRAPLLSKLLSDPSTSKENGFLLRKEPVRLARAPSAIRNPNVSN 249
>AJ130960-1|CAA10264.1| 482|Caenorhabditis elegans LIR-2B protein
protein.
Length = 482
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 62 DLEYKEGVEAPALGQYLLPLLSEQVSSANNAPER-FLIRHEDI-LQLLASAEENARDSN 118
D E + + P LG PLLS+ +S + + E FL+R E + L SA N SN
Sbjct: 125 DSEPQAVISLPTLGATRAPLLSKLLSDPSTSKENGFLLRKEPVRLARAPSAIRNPNVSN 183
>AJ130959-1|CAA10263.1| 548|Caenorhabditis elegans LIR-2A protein
protein.
Length = 548
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 62 DLEYKEGVEAPALGQYLLPLLSEQVSSANNAPER-FLIRHEDI-LQLLASAEENARDSN 118
D E + + P LG PLLS+ +S + + E FL+R E + L SA N SN
Sbjct: 191 DSEPQAVISLPTLGATRAPLLSKLLSDPSTSKENGFLLRKEPVRLARAPSAIRNPNVSN 249
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.133 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,934,931
Number of Sequences: 27539
Number of extensions: 281952
Number of successful extensions: 615
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 13
length of query: 327
length of database: 12,573,161
effective HSP length: 82
effective length of query: 245
effective length of database: 10,314,963
effective search space: 2527165935
effective search space used: 2527165935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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