GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001769-TA|BGIBMGA001769-PA|undefined
         (327 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.4  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 125 PLQPHHALSHMDSFEFE 141
           P Q H +  HMDS E++
Sbjct: 157 PRQSHQSYHHMDSVEYK 173


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 114 ARDSNPLADEVPLQPHHALSHMDSFEF 140
           A  SN   DE PL P   +S+  S EF
Sbjct: 431 ASGSNEDEDETPLDPVVVISNDKSTEF 457


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.133    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,629
Number of Sequences: 429
Number of extensions: 2936
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 327
length of database: 140,377
effective HSP length: 58
effective length of query: 269
effective length of database: 115,495
effective search space: 31068155
effective search space used: 31068155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)