GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001769-TA|BGIBMGA001769-PA|undefined
         (327 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05240.1 68416.m00572 pentatricopeptide (PPR) repeat-containi...    28   7.5  
At1g26190.1 68414.m03196 phosphoribulokinase/uridine kinase fami...    28   9.8  

>At3g05240.1 68416.m00572 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 548

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 153 LLH-YICEAETDVAVREFEPVPEW 175
           LLH Y+C  E +  +R FE +P+W
Sbjct: 148 LLHMYMCCGEVNYGLRVFEDIPQW 171


>At1g26190.1 68414.m03196 phosphoribulokinase/uridine kinase family
           protein weak similarity to SP|Q59190 Uridine kinase (EC
           2.7.1.48) (Uridine monophosphokinase) (Cytidine
           monophosphokinase) {Borrelia burgdorferi}; contains Pfam
           profile PF00485: Phosphoribulokinase / Uridine kinase
           family
          Length = 674

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 62  DLEYKEGVEAPALGQYLLPLLSEQVSSANNAPERFLIRHEDILQLLASAEENARDSNPLA 121
           D  Y+E        +  + LLSEQ+SS N   + F  R E++   L S  +N+     L+
Sbjct: 485 DRRYEERNHDSPANEGFMTLLSEQISSLNERMDEFTSRIEELNSKL-SCNKNSPTQQSLS 543


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.133    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,674,606
Number of Sequences: 28952
Number of extensions: 273374
Number of successful extensions: 711
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 2
length of query: 327
length of database: 12,070,560
effective HSP length: 81
effective length of query: 246
effective length of database: 9,725,448
effective search space: 2392460208
effective search space used: 2392460208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)