GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001767-TA|BGIBMGA001767-PA|IPR002048|Calcium-binding
EF-hand
         (143 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   1.9  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   5.7  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    20   7.5  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    20   7.5  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    20   7.5  

>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 11  FYLFARSGQITSLDELTVIMRSLGMSPTIQELAGYLKGKGG 51
           + L  RSG  T+L ++     ++G+   +  +  ++ G GG
Sbjct: 84  YILNTRSGDETALADMISRCNAVGVRIYVDTVINHMTGMGG 124


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)

Query: 36  SPTIQELAGYLKGKGGK 52
           +P++  ++  L+GKGG+
Sbjct: 151 APSVSAISRLLRGKGGE 167


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 11  FYLFARSGQITSLDELTVIMRSLGMSPTIQELAGYLKGKGG 51
           + L  RSG   +L ++     ++G+   +  +  ++ G GG
Sbjct: 83  YILNTRSGDEAALADMISRCNAVGVRIYVDTVINHMTGMGG 123


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 11  FYLFARSGQITSLDELTVIMRSLGMSPTIQELAGYLKGKGG 51
           + L  RSG   +L ++     ++G+   +  +  ++ G GG
Sbjct: 84  YILNTRSGDEAALADMISRCNAVGVRIYVDTVINHMTGMGG 124


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 3   LISEFRECFYL 13
           LI EF ECF L
Sbjct: 222 LIDEFNECFGL 232


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,314
Number of Sequences: 317
Number of extensions: 1071
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 143
length of database: 114,650
effective HSP length: 51
effective length of query: 92
effective length of database: 98,483
effective search space:  9060436
effective search space used:  9060436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)