GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001767-TA|BGIBMGA001767-PA|IPR002048|Calcium-binding
EF-hand
         (143 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    85   3e-18
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    58   7e-10
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    54   6e-09
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    48   4e-07
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    33   0.022
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    33   0.022
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   2.6  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    26   2.6  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    25   3.4  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    25   4.5  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    25   5.9  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   5.9  
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    24   7.8  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    24   7.8  
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    24   7.8  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    24   7.8  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 85.4 bits (202), Expect = 3e-18
 Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 7/137 (5%)

Query: 4   ISEFRECFYLFARS--GQITSLDELTVIMRSLGMSPT---IQELAGYLKGKG-GKMSFAD 57
           I+EFRE F LF R   G ITS +EL V+MRSLG SPT   +Q++   +   G G + F +
Sbjct: 11  IAEFREAFSLFDRDQDGNITS-NELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTE 69

Query: 58  FLEVMHIHSRAENLPSEVVNAFKAGDPNKTGVISAKQLRTLLQKWGEGLSAREVDNIFRE 117
           FL +M    +  +   EV  AFK  D +  G I+ ++L  +L   GE LS  EV ++ RE
Sbjct: 70  FLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIRE 129

Query: 118 ANVSNSATVRYEDFVKI 134
           A+      + YE+F ++
Sbjct: 130 ADTDGDGVINYEEFSRV 146


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 57.6 bits (133), Expect = 7e-10
 Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 10/139 (7%)

Query: 5   SEFRECFYLFAR--SGQI--TSLDELTVIMRSLGMSPTIQELAGYLKGKGGKMSFADFLE 60
           S +++ F LF R  +G+I  TS+ +L   +R+ G +PT+ E+         ++    FL+
Sbjct: 6   SPYKQAFSLFDRHGTGRIPKTSIGDL---LRACGQNPTLAEITEIESTLPAEVDMEQFLQ 62

Query: 61  VMHIHSRAE--NLPSEVVNAFKAGDPNKTGVISAKQLRTLLQKWGEGLSAREVDNIFREA 118
           V++  +  +    P E V  F+  D + TG+I   +LR +L   GE LS  E+D + +  
Sbjct: 63  VLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGV 122

Query: 119 NVSNSATVRYEDFVKIACA 137
            V +   V Y DFV++  A
Sbjct: 123 PVKD-GMVNYHDFVQMILA 140


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 54.4 bits (125), Expect = 6e-09
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)

Query: 6   EFRECFYLFA--RSGQITSLDELTVIMRSLGMSPTIQELAGYLKGKGGKMSFADFLEVMH 63
           E +E F L+   + G I +   +  ++RSLG++ T  ELA      G  +    F+  + 
Sbjct: 10  EMKEAFVLYDIDKDGLIPT-SHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKFMSFVS 68

Query: 64  IHSRAENLPSEVVNAFKAGDPNKTGVISAKQLRTLLQKWGEGLSAREVDNIFREANVSNS 123
              R      E + AF+  D + +G I   +    ++  GE LS  EV  + +EA+ +NS
Sbjct: 69  NKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNS 128

Query: 124 ATVRYEDFVK 133
            +  Y DFV+
Sbjct: 129 GSFDYYDFVQ 138


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 48.4 bits (110), Expect = 4e-07
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 7/135 (5%)

Query: 6   EFRECFYLFARSGQITSLD--ELTVIMRSLGMSPTIQELAGYLKG--KGGK--MSFADFL 59
           +  E F LF  S +  ++D  EL   MR+LG +    E+   L+   K GK  +   DF+
Sbjct: 38  DINEAFKLFD-SDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFV 96

Query: 60  EVMHIHSRAENLPSEVVNAFKAGDPNKTGVISAKQLRTLLQKWGEGLSAREVDNIFREAN 119
            VM       +   E+  AF+  D ++TG IS + LR + ++  E +  +E++ +  E +
Sbjct: 97  RVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEEFD 156

Query: 120 VSNSATVRYEDFVKI 134
           +     +  ++F+ I
Sbjct: 157 LDQDGEINEQEFIAI 171



 Score = 33.9 bits (74), Expect = 0.010
 Identities = 18/66 (27%), Positives = 31/66 (46%)

Query: 69  ENLPSEVVNAFKAGDPNKTGVISAKQLRTLLQKWGEGLSAREVDNIFREANVSNSATVRY 128
           E    ++  AFK  D +K   I   +LR  ++  G      EV  I R+ + +    ++ 
Sbjct: 33  EEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQM 92

Query: 129 EDFVKI 134
           EDFV++
Sbjct: 93  EDFVRV 98


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 32.7 bits (71), Expect = 0.022
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 47  KGKGGKMSFADFLEVMHIHSRAENLPSEVVNAFKAGDPNKTGVISAKQLRTLLQ 100
           +G G      + L++  I   A+ LPSEV N F   + N   ++++ +LR +++
Sbjct: 41  EGNGISAELENDLDITKISDSAQKLPSEVANKFNDNNENIYQLLNSTRLRDIIE 94


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 32.7 bits (71), Expect = 0.022
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 10/126 (7%)

Query: 16  RSGQITSLDELTVIMRSLGMSPTIQELAGYL-KGKGGKMSFADFLEVMHIHSRAENLPSE 74
           +SG I   + L++   S+  +P    L   + +  GG + F +F+  + + S   N   +
Sbjct: 37  QSGSIDRNEFLSI--PSVASNPLASRLFSVVDEDGGGDVDFQEFINSLSVFSVHGNKEEK 94

Query: 75  VVNAFKAGDPNKTGVISAKQLRTLLQKWGEGLSARE------VDNIFREANVSNSATVRY 128
           +  AFK  D ++ G IS  +L  +L K   G + RE      VD    E +      + +
Sbjct: 95  LKFAFKIYDIDRDGYISNGELYLVL-KMMVGTNLREDQLQQIVDKTIMEVDKDRDGKISF 153

Query: 129 EDFVKI 134
           E+F  I
Sbjct: 154 EEFKDI 159


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 58  FLEVMHIHSRAENLPSEVVNAF 79
           FL +M ++++  N PS+V+N F
Sbjct: 962 FLSIMDLNTKFSNAPSDVLNHF 983


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)

Query: 110 EVDNIFREANVSNSATVRYEDFVKI 134
           EV    RE NV +S  V  EDFV I
Sbjct: 55  EVREAIREVNVDSSGRVEPEDFVGI 79


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 101 KWGEGLSAREVDNIFREANVSNSATVRYEDFVKIACAPVPD 141
           +W E +S  E D  + +   S+   +  E F K+    VPD
Sbjct: 158 QW-ESVSQEEKDVFYEKLQASSQRNIENESFFKVPFFKVPD 197


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 60  EVMHIHSRAENLPSEVVNAFKAGDP 84
           +++H+  + +NL S  VNAF   DP
Sbjct: 216 KIVHVLQKNKNLISSAVNAFYYRDP 240


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 51  GKMSFADFLEVMHIHSRAENLPSEVVNAFKAGDPNKTGVISAKQLRTLLQKWGEGLSARE 110
           GK+ F DF  + +I  +   LP E V+        + G + +K L  L   WG  +  RE
Sbjct: 89  GKV-FGDFYVLEYIKCKYPRLPEEAVHGM------QNGWMGSKALSQLATIWGLEVQRRE 141


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 110 EVDNIFREANVSNSATVRYEDFVKIA 135
           ++DNI RE +  N AT R  DF+  A
Sbjct: 397 DLDNIKRELSYYNDATKRKLDFMSSA 422


>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 15  ARSGQITSLDELTVIMRSLGMSPTIQELAGYLK 47
           A SG + SLDE+  + R++      +EL+G +K
Sbjct: 99  AHSGNV-SLDEIIEVARTMRFKSLAKELSGTVK 130


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 53  MSFADFLEVMHIHSRAENLPSEVVNAFKAGDPNKTGVISAKQLRTLLQKW 102
           +S  D  ++  + S  + LP   VN   + D    G++S       LQ+W
Sbjct: 505 LSSRDEFQLTLLESTWQYLPDPNVNKVTSADNRMLGLLSYLYFNCNLQRW 554


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 15  ARSGQITSLDELTVIMRSLGMSPTIQELAGYLK 47
           A SG + SLDE+  + R++      +EL+G +K
Sbjct: 99  AHSGNV-SLDEIIEVARTMRFKSLAKELSGTVK 130


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/41 (26%), Positives = 23/41 (56%)

Query: 8   RECFYLFARSGQITSLDELTVIMRSLGMSPTIQELAGYLKG 48
           R  F+ F +   + S+D+  +I  +L +SP ++    Y++G
Sbjct: 780 RPLFFEFPKQISLASVDKQFMIGTALLISPALEPNTTYIQG 820


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,870
Number of Sequences: 5004
Number of extensions: 22031
Number of successful extensions: 66
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 17
length of query: 143
length of database: 2,362,478
effective HSP length: 67
effective length of query: 76
effective length of database: 2,027,210
effective search space: 154067960
effective search space used: 154067960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)