GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001767-TA|BGIBMGA001767-PA|IPR002048|Calcium-binding
EF-hand
         (143 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   3.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.7  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 102 WGEGLSAREVDNIFREANVSNSATVRYEDFVKIACAPV 139
           WG   + R+   I    N SN+  VR +  VK A   +
Sbjct: 67  WGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTI 104


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 36  SPTIQELAGYLKGKGGKMSFADFLEVMHIHSRAENLPSEVVN 77
           +P+I    GYLK      SF D++      + A+ + + +V+
Sbjct: 179 TPSICTALGYLKDAWIGRSFIDYVHPKDKATLADQIKNGIVS 220


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 36  SPTIQELAGYLKGKGGKMSFADFLEVMHIHSRAENLPSEVVN 77
           +P+I    GYLK      SF D++      + A+ + + +V+
Sbjct: 174 TPSICTALGYLKDAWIGRSFIDYVHPKDKATLADQIKNGIVS 215


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,268
Number of Sequences: 429
Number of extensions: 1358
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 143
length of database: 140,377
effective HSP length: 52
effective length of query: 91
effective length of database: 118,069
effective search space: 10744279
effective search space used: 10744279
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)