GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001766-TA|BGIBMGA001766-PA|IPR005221|Phosphatidylserine
decarboxylase, IPR003817|Phosphatidylserine decarboxylase-related
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...   154   2e-38
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...   149   3e-37
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    63   5e-11
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    32   0.11 
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    26   7.2  
SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|c...    25   9.5  
SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr...    25   9.5  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score =  154 bits (373), Expect = 2e-38
 Identities = 79/176 (44%), Positives = 106/176 (60%), Gaps = 10/176 (5%)

Query: 117 ESYYNSLLKNKENILHQCIIYLAPGDYHRFHAPCDWTATFRRHFSGKLLSVNPWLAKLIP 176
           +S +      + N L+  +IYLAPGDYHRFH+P DW    RRHFSG+L SV+P++A+ + 
Sbjct: 257 KSQFTLFGSRETNCLYYAVIYLAPGDYHRFHSPTDWVVERRRHFSGELFSVSPFMARRLG 316

Query: 177 GLFTVNERAVYVGEWEYGFFSMTAVGATNVGSIEIFKDPELRTNTKGKRNRVNELELGQV 236
            LF +NER   +G ++YGF SM  VGATNVGSI I  D +L TN  GK   V   +    
Sbjct: 317 NLFILNERVALMGRYKYGFMSMIPVGATNVGSIRIKFDKDLCTNQFGKLGPVGTFDEAVY 376

Query: 237 CMS----------KGELFGQFNMGSTIILLFEAPKDFKFDMAAGDKVLVGQSLTKV 282
             S          +G+  G F +GST++L+FEAP DF+F +  G KV VG  L +V
Sbjct: 377 TSSSSILHGHPLLRGDEVGNFELGSTVVLVFEAPADFEFLVKQGQKVRVGLPLGRV 432



 Score =  103 bits (247), Expect = 3e-23
 Identities = 51/114 (44%), Positives = 71/114 (62%), Gaps = 1/114 (0%)

Query: 3   PFRVTSRLWGKMAACEIPVSLRSFVYGTYIRMFSVNLNDAAVTDLKYYKSLSAFFTRPLR 62
           P R  SR WG +   EIP+ +R   +G Y ++F  NL +A   D++ YK+L+ FFTR L+
Sbjct: 81  PLRTLSRWWGYVNRIEIPLWMRVPAFGLYSKIFGCNLTEADPDDVRQYKNLAEFFTRKLK 140

Query: 63  DGARYISA-APCVSPCDGVVLNCGPADTDKIEQVKGVTYSLEEFLGENKWLKRK 115
            GAR I   AP V P DG +LN G  +  ++EQVKG+TYSL+  LG+ K  + K
Sbjct: 141 PGARVIDPDAPIVIPADGKILNYGVIEGGQLEQVKGITYSLDALLGDEKLARLK 194


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score =  149 bits (362), Expect = 3e-37
 Identities = 78/162 (48%), Positives = 102/162 (62%), Gaps = 11/162 (6%)

Query: 129 NILHQCIIYLAPGDYHRFHAPCDWTATFRRHFSGKLLSVNPWLAKLIPGLFTVNERAVYV 188
           N L   +IYLAPGDYHRFH+P DW    RRHFSG+L SV+P+LA+ +  LF +NER   +
Sbjct: 355 NKLFYSVIYLAPGDYHRFHSPADWVIESRRHFSGELFSVSPFLARRLHNLFVLNERVALL 414

Query: 189 GEWEYGFFSMTAVGATNVGSIEIFKDPELRTNTKGKRNR-VNELE----------LGQVC 237
           G +E+GF SM  VGATNVGSI I  DP L TN    R + +   +          L  + 
Sbjct: 415 GRYEHGFMSMIPVGATNVGSIVINCDPTLSTNRLVLRKKSLGTFQEAVYKNASPVLDGMP 474

Query: 238 MSKGELFGQFNMGSTIILLFEAPKDFKFDMAAGDKVLVGQSL 279
           +S+GE  G F +GST++L+FEAP DF+F    G  V VG++L
Sbjct: 475 VSRGEQVGGFQLGSTVVLVFEAPADFEFSTYQGQYVRVGEAL 516



 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 1/106 (0%)

Query: 3   PFRVTSRLWGKMAACEIPVSLRSFVYGTYIRMFSVNLNDAAVTDLKYYKSLSAFFTRPLR 62
           P R  SR+WG+     +P  LR+  +  Y  +F  NL++    DL +Y++   FF R LR
Sbjct: 83  PLRSLSRVWGQFNRAHLPTFLRTPGFKLYAWVFGCNLSELKDPDLTHYRNFQDFFCRELR 142

Query: 63  DGARYIS-AAPCVSPCDGVVLNCGPADTDKIEQVKGVTYSLEEFLG 107
              R +   +P VSP DG ++  G  D ++I+ VKG++YSLE  LG
Sbjct: 143 PETRPVDPVSPVVSPVDGRIVCQGVVDNNRIQHVKGLSYSLEALLG 188


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 13/196 (6%)

Query: 20  PVSLRSFVYGTYIRMFSVNLNDAAVTDLKYYKSLSAFFTRPLRDGARYISAAPCVSPCDG 79
           P+S++      +IR F +N+N+  +  +  +K+ + FF R L+ G+R     PC  P + 
Sbjct: 723 PISVKEIK--PFIRFFDLNMNEVDMP-VGGFKTFNEFFYRKLKPGSR-----PCAFPDNP 774

Query: 80  VVLNCGPADTDKIEQVKGVTYSLEEFLGENKWLKRKDESYYNSLLKNKENILHQCIIYLA 139
            +L   PAD+ +I   + +  +   ++   ++   +   Y N   +     +  CI  LA
Sbjct: 775 DIL-VSPADS-RIVAYECIEKATTYWIKGTEFTVERLLGYSNEAQRFVGGSI--CISRLA 830

Query: 140 PGDYHRFHAPCDWTATFRRHFSGKLLSVNPWLAKLIPGLFTVNERA-VYVGEWEYGFFSM 198
           P DYHRFH+P +          G+  +VNP   +    +F  N R  + +   E+G   +
Sbjct: 831 PQDYHRFHSPVNGCIGPITKIEGQYYTVNPMAIRSYLDVFGENVRVLIPIDSNEFGKVML 890

Query: 199 TAVGATNVGSIEIFKD 214
            AVGA  VGS  +  D
Sbjct: 891 VAVGAMMVGSTVLTVD 906


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 6   VTSRLWGKMAACEIPVSLRSFVYGTYIRMFSVNLNDA 42
           V+ RL G M+    P++L +F YG Y+R  S    DA
Sbjct: 300 VSMRLTGYMSLIVPPIALGAFFYGEYVRKLSRTTQDA 336


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 195 FFSMTAVGATNVGSIEIFKDPELRTNTKGKRNRVNELELGQV 236
           F  M AVG  + GSI ++KD EL     G ++ V  ++  ++
Sbjct: 75  FDEMYAVGYAD-GSIRLWKDGELLITLNGHKSAVTTMDFDKM 115


>SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 95  VKGVTYSLEEFLGENKWLKRKDESYYNSLLKNKE-NILHQCIIYL 138
           +KG T+         KW  +  + Y N+ +  +E NIL  C  YL
Sbjct: 80  IKGATWQHHNCQSTGKWYSQLYD-YQNTFIGKQEYNILFDCYSYL 123


>SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 129

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 95  VKGVTYSLEEFLGENKWLKRKDESYYNSLLKNKE-NILHQCIIYL 138
           +KG T+         KW  +  + Y N+ +  +E NIL  C  YL
Sbjct: 80  IKGATWQHHNCQSTGKWYSQLYD-YQNTFIGKQEYNILFDCYSYL 123


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,339,462
Number of Sequences: 5004
Number of extensions: 57346
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 10
length of query: 288
length of database: 2,362,478
effective HSP length: 72
effective length of query: 216
effective length of database: 2,002,190
effective search space: 432473040
effective search space used: 432473040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)