GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001766-TA|BGIBMGA001766-PA|IPR005221|Phosphatidylserine
decarboxylase, IPR003817|Phosphatidylserine decarboxylase-related
         (288 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11...   150   1e-36
01_07_0252 - 42296138-42296281,42296527-42296613,42297043-422971...    65   7e-11
05_07_0057 - 27386081-27386164,27386317-27386379,27386584-273866...    30   1.9  

>03_01_0014 +
           113638-113754,113836-113950,114570-114835,115365-115575,
           115915-115979,118723-118930,119457-119566,119663-119913,
           120250-120356,120442-120509,120624-120701,121070-121198,
           121341-121481,122297-122344,122648-122743,124071-124183,
           124441-124591,124745-124818,124913-125072,125356-125454,
           125532-125618,125761-125907
          Length = 946

 Score =  150 bits (363), Expect = 1e-36
 Identities = 107/267 (40%), Positives = 143/267 (53%), Gaps = 46/267 (17%)

Query: 38  NLNDAAVTDLKYYKSLSAFFTRPLRDGARYISAAP-C-VSPCDGVVLNCGP--ADTDKIE 93
           +L +AA+  L+ Y SL AFF R L++G+R I A P C VSP DG VL  G        IE
Sbjct: 328 DLQEAAMP-LEEYPSLQAFFIRSLKEGSRPIDADPNCLVSPVDGKVLRLGELRGPGTMIE 386

Query: 94  QVK----------GVTYSL-----EEFLGEN------------KWLK---RKDESYYNSL 123
           QVK          G + SL     E+F  E+             W +    K + +  +L
Sbjct: 387 QVKGFSYSAASLLGASSSLHGAEEEDFSREHTEQSNPADSNAKSWWRVSVAKPKLWDQTL 446

Query: 124 LKNKENILHQCIIYLAPGDYHRFHAPCDWTATFRRHFSGKLLSVNPWLAKLIPGLFTVNE 183
           L  K+ I + C+IYL PGDYHR H+P DW    RRHFSG L   N    + I  L+  NE
Sbjct: 447 LSPKKGIFY-CVIYLHPGDYHRVHSPVDWNIIKRRHFSGHLFPQNERAVRTIRNLYVENE 505

Query: 184 RAVYVGEWEYGFFSMTAVGATNVGSIEIFKDPELRTNTKGKR----------NRVNELEL 233
           R V  G+W+ GF ++ A+GATNVGSI+++ +PELRTN  G +          +RV E   
Sbjct: 506 RVVLEGQWKEGFVAIAAIGATNVGSIKLYIEPELRTNRAGSKILNSQPEPPDDRVYEPVG 565

Query: 234 GQVCMSKGELFGQFNMGSTIILLFEAP 260
             V + KGE    F MGST++++FEAP
Sbjct: 566 TGVMVKKGEEIAGFKMGSTVVMVFEAP 592


>01_07_0252 -
           42296138-42296281,42296527-42296613,42297043-42297135,
           42297267-42297341,42297480-42297575,42297987-42298133,
           42298225-42298296,42298912-42298959,42299507-42299607,
           42300226-42300337,42300506-42300590,42300693-42300848,
           42300956-42301047,42301155-42301238,42301676-42301726,
           42302227-42302295,42302417-42302476,42303305-42303535
          Length = 600

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 19/203 (9%)

Query: 18  EIPVSLRSFVYGTYIRMFSVNLNDAAVTDLKYYKSLSAFFTRPLRDGARYISA--APCVS 75
           E+   L SF     + ++ + + +     L+   + + FF R L+ GAR I+      ++
Sbjct: 354 EVKDPLESFKACDLVFIYLLIIFEIGPLTLRLPMTFNEFFVRQLKPGARPIACYEQDTIA 413

Query: 76  PC--DGVVLNCGPADTDKIEQVKGVTYSLEEFLGENKWLKRKDESYYNSLLKNKENILHQ 133
            C  D  ++     D      +KG  +S+E  LG++      D     SL+         
Sbjct: 414 TCAADSRLMTFSSVDESTRLWIKGRKFSIEGLLGKDV---HSDALCNGSLV--------- 461

Query: 134 CIIYLAPGDYHRFHAPCDWTATFRRHFSGKLLSVNP-WLAKLIPGLFTVNERAV-YVGEW 191
            I  LAP DYHRFH P   T        G L +VNP  +      +FT N+R V  +   
Sbjct: 462 -IFRLAPQDYHRFHVPVSGTLEKFVEIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTS 520

Query: 192 EYGFFSMTAVGATNVGSIEIFKD 214
           E+G  +  A+GAT VGSIE  K+
Sbjct: 521 EFGKVAFVAIGATMVGSIEFLKE 543


>05_07_0057 -
           27386081-27386164,27386317-27386379,27386584-27386637,
           27386768-27386881,27386965-27387192
          Length = 180

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 79  GVVLNCG---PADTDKIEQVKGVTYSLEEFLGENKWLKRKDESY---YNSLLKNKENILH 132
           G V+NCG      T  +E V G     E    EN++LK+K ES+     +++ NKEN   
Sbjct: 115 GKVMNCGGGGSCGTCIVEIVDGKELLNERTNTENRYLKKKPESWRLACQTIVGNKENSGK 174

Query: 133 QC 134
            C
Sbjct: 175 AC 176


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,255,049
Number of Sequences: 37544
Number of extensions: 338477
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 4
length of query: 288
length of database: 14,793,348
effective HSP length: 81
effective length of query: 207
effective length of database: 11,752,284
effective search space: 2432722788
effective search space used: 2432722788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)