GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001766-TA|BGIBMGA001766-PA|IPR005221|Phosphatidylserine
decarboxylase, IPR003817|Phosphatidylserine decarboxylase-related
         (288 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00031-3|AAK18866.2|  348|Caenorhabditis elegans Hypothetical pr...   233   8e-62
U00031-2|AAT92090.1|  377|Caenorhabditis elegans Hypothetical pr...   233   8e-62

>U00031-3|AAK18866.2|  348|Caenorhabditis elegans Hypothetical
           protein B0361.5a protein.
          Length = 348

 Score =  233 bits (571), Expect = 8e-62
 Identities = 129/280 (46%), Positives = 169/280 (60%), Gaps = 16/280 (5%)

Query: 3   PFRVTSRLWGKMAACEIPVSLRSFVYGTYIRMFSVNLNDAAVTDLKYYKSLSAFFTRPLR 62
           PF   SR+ G +A  EIPV LR  + G + RM+   ++D    D K Y S +AFF R L+
Sbjct: 77  PFNTASRVIGGLANQEIPVWLREHLLGGFARMYDCRMDDCVDPDFKNYPSFAAFFNRKLK 136

Query: 63  DGARYISAAPCVSPCDGVVLNCGPADTDKIEQVKGVTYSLEEFLGENKWLKRKDESYYNS 122
           +  R ISA+P VSP DG VL+ G  + +KIE VKG  Y +++FLG+   L +KDE     
Sbjct: 137 ESTRPISASPLVSPADGTVLHFGKVEDNKIEYVKGHDYDVDKFLGDVD-LPQKDELD--- 192

Query: 123 LLKNKENILHQCIIYLAPGDYHRFHAPCDWTATFRRHFSGKLLSVNPWLAKLIPGLFTVN 182
                   L+Q +IYLAPGDYH FH+P  W A   RH  G LLSV P L   +P LF +N
Sbjct: 193 --------LYQVVIYLAPGDYHAFHSPARWVANQCRHVPGLLLSVRPTLLSHVPHLFCLN 244

Query: 183 ERAVYVGEWEYGFFSMTAVGATNVGSIEIFKDPELRTN-TKGKRNRV--NELELGQVCMS 239
           ER V  G W +GFFSM+AV ATNVG I +  +P LRTN  + K  ++   E E+    +S
Sbjct: 245 ERVVLNGSWRHGFFSMSAVAATNVGDIVVDAEPSLRTNIVRRKTQKIMNTETEIHAPYVS 304

Query: 240 KGELFGQFNMGSTIILLFEAPKDFKFDMAAGDKVLVGQSL 279
            GE  G+F +GSTI+L+F+AP   KF + AGD +  GQSL
Sbjct: 305 -GERVGEFRLGSTIVLVFQAPPTIKFAIKAGDPLRYGQSL 343


>U00031-2|AAT92090.1|  377|Caenorhabditis elegans Hypothetical
           protein B0361.5b protein.
          Length = 377

 Score =  233 bits (571), Expect = 8e-62
 Identities = 129/280 (46%), Positives = 169/280 (60%), Gaps = 16/280 (5%)

Query: 3   PFRVTSRLWGKMAACEIPVSLRSFVYGTYIRMFSVNLNDAAVTDLKYYKSLSAFFTRPLR 62
           PF   SR+ G +A  EIPV LR  + G + RM+   ++D    D K Y S +AFF R L+
Sbjct: 106 PFNTASRVIGGLANQEIPVWLREHLLGGFARMYDCRMDDCVDPDFKNYPSFAAFFNRKLK 165

Query: 63  DGARYISAAPCVSPCDGVVLNCGPADTDKIEQVKGVTYSLEEFLGENKWLKRKDESYYNS 122
           +  R ISA+P VSP DG VL+ G  + +KIE VKG  Y +++FLG+   L +KDE     
Sbjct: 166 ESTRPISASPLVSPADGTVLHFGKVEDNKIEYVKGHDYDVDKFLGDVD-LPQKDELD--- 221

Query: 123 LLKNKENILHQCIIYLAPGDYHRFHAPCDWTATFRRHFSGKLLSVNPWLAKLIPGLFTVN 182
                   L+Q +IYLAPGDYH FH+P  W A   RH  G LLSV P L   +P LF +N
Sbjct: 222 --------LYQVVIYLAPGDYHAFHSPARWVANQCRHVPGLLLSVRPTLLSHVPHLFCLN 273

Query: 183 ERAVYVGEWEYGFFSMTAVGATNVGSIEIFKDPELRTN-TKGKRNRV--NELELGQVCMS 239
           ER V  G W +GFFSM+AV ATNVG I +  +P LRTN  + K  ++   E E+    +S
Sbjct: 274 ERVVLNGSWRHGFFSMSAVAATNVGDIVVDAEPSLRTNIVRRKTQKIMNTETEIHAPYVS 333

Query: 240 KGELFGQFNMGSTIILLFEAPKDFKFDMAAGDKVLVGQSL 279
            GE  G+F +GSTI+L+F+AP   KF + AGD +  GQSL
Sbjct: 334 -GERVGEFRLGSTIVLVFQAPPTIKFAIKAGDPLRYGQSL 372


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,170,269
Number of Sequences: 27539
Number of extensions: 304367
Number of successful extensions: 523
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 2
length of query: 288
length of database: 12,573,161
effective HSP length: 81
effective length of query: 207
effective length of database: 10,342,502
effective search space: 2140897914
effective search space used: 2140897914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)