GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001766-TA|BGIBMGA001766-PA|IPR005221|Phosphatidylserine
decarboxylase, IPR003817|Phosphatidylserine decarboxylase-related
         (288 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           23   2.4  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           23   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.6  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 82  LNCGPADTDKIEQVKGVTYSLEEFLGENKW-LKRKDE 117
           L    +D ++I+Q  G+T   ++ L +N W + RKDE
Sbjct: 8   LGISSSDDNRIDQATGLT-ERQKKLVQNTWAVVRKDE 43


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 82  LNCGPADTDKIEQVKGVTYSLEEFLGENKW-LKRKDE 117
           L    +D ++I+Q  G+T   ++ L +N W + RKDE
Sbjct: 8   LGISSSDDNRIDQATGLT-ERQKKLVQNTWAVVRKDE 43


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 89   TDKIEQVKGVTYSLEEFLGENKWLKRKDESY 119
            +DKI+ V G T   E F+   K +  ++++Y
Sbjct: 1514 SDKIKFVPGTTSQPEVFVNGEKIVVSRNKAY 1544


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,920
Number of Sequences: 429
Number of extensions: 3640
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 288
length of database: 140,377
effective HSP length: 57
effective length of query: 231
effective length of database: 115,924
effective search space: 26778444
effective search space used: 26778444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)