Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001765-TA|BGIBMGA001765-PA|IPR004827|Basic-leucine
zipper (bZIP) transcription factor, IPR006035|Ureohydrolase,
IPR008917|Eukaryotic transcription factor, DNA-binding
         (389 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     29   0.075
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    29   0.075
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           29   0.075
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    27   0.17 
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    24   1.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.8  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   4.9  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    23   4.9  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    23   4.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   6.5  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   8.6  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   8.6  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 0.075
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 121 YHHEGLHMHNDFGGRHQVAPPHVAGLQPALE 151
           Y+H  LH H+     HQ+ PP +   QP  E
Sbjct: 84  YYHPQLHSHHGPPIHHQIRPPILHDTQPMCE 114


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 0.075
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 121 YHHEGLHMHNDFGGRHQVAPPHVAGLQPALE 151
           Y+H  LH H+     HQ+ PP +   QP  E
Sbjct: 84  YYHPQLHSHHGPPIHHQIRPPILHDTQPMCE 114


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 0.075
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 121 YHHEGLHMHNDFGGRHQVAPPHVAGLQPALE 151
           Y+H  LH H+     HQ+ PP +   QP  E
Sbjct: 84  YYHPQLHSHHGPPIHHQIRPPILHDTQPMCE 114


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 121 YHHEGLHMHNDFGGRHQVAPPHVAGLQP 148
           Y+H  LH H+     HQ+ PP +   QP
Sbjct: 84  YYHPQLHSHHGPPIHHQIRPPILHDTQP 111


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 197 DKRVRRLTDGSASDGGSSCTSAQHLSRDEKRAKALGIPLE 236
           D RV + T G+ SDG + C     L  D    +++G P +
Sbjct: 608 DDRVEQDTSGTCSDGDTFCGIKDKLYPDR---RSMGYPFD 644


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 42  PSLSDGEWCDGSDSAQEFHSSKFRPFESSYGRERSASHQPQKK 84
           P    G+   G  +  E H  K R    +YG E+SAS  P+KK
Sbjct: 174 PGKGLGKDLQGISAPVEAHLRKGRGAIGAYGPEKSAS-IPKKK 215


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 197 DKRVRRLTDGSASDGGSSCTSAQHLSRDEKRAKALGIPLE 236
           D ++ + T+G  +D GS C     L  D    +++G P +
Sbjct: 609 DDKIDQSTEGVCNDAGSYCGIKDKLYPDR---RSMGYPFD 645


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 144 AGLQPALELNAPHSSHALLQGAVGPGFGVPERVRHNHTYSAPLAAPPHAPTVR 196
           AG+Q  L+  AP S   L  G+ G GF + +   +   Y+A        P  R
Sbjct: 243 AGIQYWLDEGAPPSKINLGLGSYGRGFALADPT-NTSLYAATYGGSEAGPYTR 294


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 144 AGLQPALELNAPHSSHALLQGAVGPGFGVPERVRHNHTYSAPLAAPPHAPTVR 196
           AG+Q  L+  AP S   L  G+ G GF + +   +   Y+A        P  R
Sbjct: 243 AGIQYWLDEGAPPSKINLGLGSYGRGFALADPT-NTSLYAATYGGSEAGPYTR 294


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 52  GSDSAQEFHSSKFRPFESSYGRERSASHQPQKK 84
           G  +AQ     +F P++    R+R + H PQ++
Sbjct: 72  GRAAAQGMPYPRFPPYDRMDIRDRRSLHGPQQQ 104


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 144 AGLQPALELNAPHSSHALLQGAVGPGFGVPERVRHNHTYSAPLAAPPHAPTVRDKRV 200
           AG+Q  L+  AP S   L  G  G GF + +   +   Y+         P  R+  V
Sbjct: 242 AGIQYWLDEGAPPSKINLGLGTYGRGFALADPT-NTSLYAGTYGGSDAGPYTREMGV 297


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 171 GVPERVRHNHTYSAPLAAPPHAP 193
           G   +V+     ++PL  PPH P
Sbjct: 3   GFVRQVKQEADSTSPLLTPPHNP 25


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,218
Number of Sequences: 317
Number of extensions: 3303
Number of successful extensions: 20
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 12
length of query: 389
length of database: 114,650
effective HSP length: 58
effective length of query: 331
effective length of database: 96,264
effective search space: 31863384
effective search space used: 31863384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)