GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001765-TA|BGIBMGA001765-PA|IPR004827|Basic-leucine
zipper (bZIP) transcription factor, IPR006035|Ureohydrolase,
IPR008917|Eukaryotic transcription factor, DNA-binding
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    31   0.28 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    30   0.48 
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    28   2.0  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    28   2.6  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   3.4  
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc...    27   6.0  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    27   6.0  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   6.0  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   6.0  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   6.0  
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    26   7.9  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    26   7.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   7.9  

>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 249 NERLSKHDLSEAQLSLIRD-IRRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQ 307
           NE  S HD       ++ D +    KN V  +    R + +      EV  + +RK    
Sbjct: 305 NEPFSDHDFQRWHHQMMEDKLSMPSKNFVQRKLNDLRDMSKYVLSEKEVSDIINRKKELS 364

Query: 308 RDHHSLLAERQRLKERFAALY 328
           R   ++ AE+ RL++R  A Y
Sbjct: 365 RVPSNIAAEKTRLRQRRQAAY 385


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 1/102 (0%)

Query: 218 AQHLSRDEKRAKALGIPLEVQDIINLPMDEFNERLSKHDLSEAQLSLIRDIRRRGKNKVA 277
           A+   R  + A+ L      + +     +E  ++  +  L   Q    +++ R+ + +  
Sbjct: 607 AKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQ 666

Query: 278 AQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQR 319
            Q  R++KL +    AD  +  R+++LR + +   +L ER+R
Sbjct: 667 KQKEREKKLKKQQQEADREKMAREQRLR-EEEEKRILEERKR 707


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 271 RGKNKVAAQNCRKRKLD----QITSLADEVRTVRDRKLRTQRDHHSLLA-ERQRLKERFA 325
           R KN+   QN +  ++      +  +  E+  V + ++R+ RD  ++   E+QR K+ +A
Sbjct: 278 REKNEKLLQNVKTSEIPINAADLEGINPELLPVIEEEIRSFRDQSAMKKREKQRSKDEYA 337

Query: 326 ALYR 329
           +LY+
Sbjct: 338 SLYK 341


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 225  EKRAKALGIPLEVQDIINLP-MDEFNERLSKHDLSEAQLSLIRDIRRRGKNKVAAQNCRK 283
            +K+   L       DI  +  +DE   R       EAQ+S   D ++R ++ V+    R 
Sbjct: 1972 QKQISDLEASFAASDIERIKGIDECRNRDRTIRQLEAQISKFDDDKKRIQSSVSRLEERN 2031

Query: 284  RKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRLK 321
             +L     L D   +    K   +R  H+L  ER+R+K
Sbjct: 2032 AQLRN--QLEDVQASETQWKFALRRTEHALQEERERVK 2067


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 246  DEFNERLSKHDLSEAQLSLIRDIRRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLR 305
            D F++ +     +E + + + +I      K+   N R    D + S+A ++R    R+++
Sbjct: 1263 DLFDDSIFSMSFAELKYTALSNIVEM--EKLGFANRRNNYQDMVNSIALDIRNKSRRRMQ 1320

Query: 306  TQRD----HHSLLAERQR 319
             QR+    H SLL  R++
Sbjct: 1321 RQRELDAGHQSLLNLREK 1338


>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 256 DLSEAQLSLIRDIRRRGKNKVAAQNCRKRKLDQITSLADEV 296
           D + ++L+  +    + +N+ AAQ CR +K   + +L D+V
Sbjct: 113 DENTSKLTGTKQSMLKARNRQAAQKCRIKKKKYLQTLQDQV 153


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 125 GLHMHNDFGGRHQVAPPHVAGLQPALELNAPHSSHALLQGAVGPGFGVPERV 176
           G+   N     H +  P VA    A  L+   SS      A+GP +G+ + +
Sbjct: 30  GIKSRNRSSIGHSITDPQVASRINAFYLSNVQSSIPFETDAIGPAYGIGDMI 81


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 278 AQNCRKRKLDQITSL----ADEVRTVRDRKLRTQRDHHSLLAERQRLKERFAAL 327
           A++  KRKLD   ++    A+ ++TV + + + +  +H   A R+R K  F  L
Sbjct: 468 AEHYYKRKLDNAKAINALWAENLKTVVEEQDQIEERYHRSEAHRRRTKRAFRRL 521


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 203 LTDGSASDGGSSCTSAQHLSRDEKRAKALGIPLEVQDIINLPMDE 247
           L     S G S   ++   S D    +A  +PL+V D +N+ ++E
Sbjct: 790 LNSKEKSTGKSGKKTSPQSSEDAANKEASSVPLKVPDKVNIEIEE 834


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 13/133 (9%)

Query: 252 LSKHDLSEAQLSLIRDIRRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHH 311
           LSK  +S A+  +   + RR KN+V     +K ++ +   L++    + +R    Q+ + 
Sbjct: 758 LSKQRISRAKTMMTPFVLRRRKNQVLNDLPKKTQIIEHCKLSENQLEIYNRYAALQK-NQ 816

Query: 312 SLLAERQRLKERFAALYRHVFQNLRDPEGRPLSSGQYSLQ-QAADGNVVLVPKMPQHQDH 370
            L  + +R K           +N  + +G+ LS+G   +Q + A  + +L  K   + D 
Sbjct: 817 QLRRDDKRNKRS---------KNDEESDGKSLSAGHVLMQLRKAANHALLFRKF--YDDE 865

Query: 371 PMNRTSDDEMERK 383
            + + + D M+ +
Sbjct: 866 KLKQMAKDIMQEE 878


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 287 DQITSLADEVRTVRDRKLRTQRDHHSLLAER 317
           ++I ++ D+  T +D+ L+T R H+ +L  R
Sbjct: 51  EEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/78 (19%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 261 QLSLIRDIRRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRT-QRDHHSLLAERQR 319
           QLS I + +++ +  +     RK+   ++     E + + ++++ + Q    ++L  +Q+
Sbjct: 48  QLSEINEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQK 107

Query: 320 LKERFAALYRHVFQNLRD 337
           L E     YR +  + R+
Sbjct: 108 LSEELDH-YRAIISSKRE 124


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 258  SEAQLSLIRDIRRRGKNKVAAQNCRKRKLDQITSLADEV-RTVRDRKLRTQRDHHSLLAE 316
            SE   SL++DI  + K+ + +  CR+ KL+   +  DE+ R   +   R   +  SL++E
Sbjct: 1205 SEFNFSLLKDITSKWKDLLESFECRRLKLE---NNKDEILRNFSEFAKRVNTETLSLISE 1261


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,612,452
Number of Sequences: 5004
Number of extensions: 64057
Number of successful extensions: 195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 18
length of query: 389
length of database: 2,362,478
effective HSP length: 74
effective length of query: 315
effective length of database: 1,992,182
effective search space: 627537330
effective search space used: 627537330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)