Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001765-TA|BGIBMGA001765-PA|IPR004827|Basic-leucine
zipper (bZIP) transcription factor, IPR006035|Ureohydrolase,
IPR008917|Eukaryotic transcription factor, DNA-binding
(389 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42843-3|AAM75365.1| 310|Caenorhabditis elegans Skinhead protei... 61 2e-09
U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protei... 61 2e-09
U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protei... 61 2e-09
AC006693-3|AAF60377.1| 455|Caenorhabditis elegans Skn related p... 58 1e-08
AF039713-13|AAB96719.2| 690|Caenorhabditis elegans Hypothetical... 38 0.009
U23179-12|AAN63445.1| 224|Caenorhabditis elegans Hypothetical p... 38 0.012
U23179-11|AAN63447.1| 293|Caenorhabditis elegans Hypothetical p... 38 0.012
U23179-10|AAN63446.1| 329|Caenorhabditis elegans Hypothetical p... 38 0.012
Z54216-9|CAA90948.1| 101|Caenorhabditis elegans Hypothetical pr... 36 0.049
Z54216-8|CAI46586.1| 299|Caenorhabditis elegans Hypothetical pr... 36 0.049
Z54216-7|CAB76416.2| 319|Caenorhabditis elegans Hypothetical pr... 36 0.049
Z36238-10|CAL63999.1| 287|Caenorhabditis elegans Hypothetical p... 35 0.11
Z36238-9|CAL63998.1| 335|Caenorhabditis elegans Hypothetical pr... 35 0.11
AF443191-1|AAL60201.1| 285|Caenorhabditis elegans X-box binding... 35 0.11
AF443190-1|AAL60200.1| 287|Caenorhabditis elegans X-box binding... 35 0.11
AY835433-1|AAX37360.1| 331|Caenorhabditis elegans bZIP transcri... 34 0.15
AY835432-1|AAX37359.1| 467|Caenorhabditis elegans bZIP transcri... 34 0.15
AF016440-2|AAB65905.2| 331|Caenorhabditis elegans Abnormal ever... 34 0.15
AF016440-1|ABA54419.1| 467|Caenorhabditis elegans Abnormal ever... 34 0.15
AF016424-7|AAB65329.3| 520|Caenorhabditis elegans Hypothetical ... 34 0.15
AC006696-10|AAF39990.1| 228|Caenorhabditis elegans Hypothetical... 34 0.20
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 30 2.4
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 29 4.2
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 29 4.2
U58735-5|AAC48145.1| 210|Caenorhabditis elegans Hypothetical pr... 29 5.6
U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome regu... 29 5.6
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 5.6
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 5.6
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 5.6
Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical pr... 29 7.4
Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical pr... 29 7.4
Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical pr... 29 7.4
Z49128-6|CAA88957.1| 621|Caenorhabditis elegans Hypothetical pr... 29 7.4
AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein... 29 7.4
Z93385-7|CAB07642.1| 843|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z81083-7|CAB03105.1| 843|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical pr... 28 9.8
AF039052-10|AAF98634.1| 536|Caenorhabditis elegans Hypothetical... 28 9.8
>U42843-3|AAM75365.1| 310|Caenorhabditis elegans Skinhead protein
1, isoform b protein.
Length = 310
Score = 60.9 bits (141), Expect = 2e-09
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 222 SRDEKRAKALGIPLEVQDIINLPMDEFNERLSKHDLSEAQLSLIRDIRRRGKNKVAAQNC 281
S+DE+ A +P+ I + + E + L LSE Q LIR IRRRGKNKVAA+ C
Sbjct: 236 SKDEQLASDNELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTC 295
Query: 282 RKRKLDQ 288
R+R+ D+
Sbjct: 296 RQRRTDR 302
>U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protein
1, isoform c protein.
Length = 533
Score = 60.9 bits (141), Expect = 2e-09
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 222 SRDEKRAKALGIPLEVQDIINLPMDEFNERLSKHDLSEAQLSLIRDIRRRGKNKVAAQNC 281
S+DE+ A +P+ I + + E + L LSE Q LIR IRRRGKNKVAA+ C
Sbjct: 459 SKDEQLASDNELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTC 518
Query: 282 RKRKLDQ 288
R+R+ D+
Sbjct: 519 RQRRTDR 525
>U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protein
1, isoform a protein.
Length = 623
Score = 60.9 bits (141), Expect = 2e-09
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 222 SRDEKRAKALGIPLEVQDIINLPMDEFNERLSKHDLSEAQLSLIRDIRRRGKNKVAAQNC 281
S+DE+ A +P+ I + + E + L LSE Q LIR IRRRGKNKVAA+ C
Sbjct: 549 SKDEQLASDNELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTC 608
Query: 282 RKRKLDQ 288
R+R+ D+
Sbjct: 609 RQRRTDR 615
>AC006693-3|AAF60377.1| 455|Caenorhabditis elegans Skn related
protein 1 protein.
Length = 455
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 222 SRDEKRAKALGIPLEVQDIINLPMDEFNERLSKHDLSEAQLSLIRDIRRRGKNKVAAQNC 281
S DE+ A G+P+ I + + E + L L+E Q+ LIR IRRRGKNK AA+ C
Sbjct: 387 SIDEQLASDNGLPVSAFQISEMSLSEVKQVLKDESLNEYQIQLIRKIRRRGKNKAAARTC 446
Query: 282 RKRK 285
R+R+
Sbjct: 447 RERR 450
>AF039713-13|AAB96719.2| 690|Caenorhabditis elegans Hypothetical
protein F57B10.1 protein.
Length = 690
Score = 38.3 bits (85), Expect = 0.009
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 257 LSEAQLSLIRDIRRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAE 316
L++A+ ++ IRR+ +NK +AQ RKRK D I L D V ++ L +E
Sbjct: 277 LTKAEERDLKRIRRKIRNKRSAQTSRKRKQDYIEQLEDRVSESTKENQALKQQIERLSSE 336
Query: 317 RQRLKERFAALYRHVFQNLR 336
Q + + L + QN +
Sbjct: 337 NQSVISQLKKLQAQLGQNAK 356
>U23179-12|AAN63445.1| 224|Caenorhabditis elegans Hypothetical
protein C27D6.4a protein.
Length = 224
Score = 37.9 bits (84), Expect = 0.012
Identities = 22/105 (20%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 219 QHLSRDEKRAKALGIPLEVQDIINLPMDEFNERLSKHDLSEAQLSLIRDIRRRGKNKVAA 278
QHL D+ + L ++ L + ++ K+ L++++ ++ +RR+ KNK++A
Sbjct: 111 QHLITDQNITANGDLVLSAEERRTLVQEGYSIP-QKYPLTKSEEESLKIVRRKIKNKLSA 169
Query: 279 QNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRLKER 323
Q R+++ + I +L + + ++ H L A + L+++
Sbjct: 170 QESRRKRKEYIDALEGRLHCFSEENKSLKKQVHQLEASNRDLQQK 214
>U23179-11|AAN63447.1| 293|Caenorhabditis elegans Hypothetical
protein C27D6.4c protein.
Length = 293
Score = 37.9 bits (84), Expect = 0.012
Identities = 22/105 (20%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 219 QHLSRDEKRAKALGIPLEVQDIINLPMDEFNERLSKHDLSEAQLSLIRDIRRRGKNKVAA 278
QHL D+ + L ++ L + ++ K+ L++++ ++ +RR+ KNK++A
Sbjct: 180 QHLITDQNITANGDLVLSAEERRTLVQEGYSIP-QKYPLTKSEEESLKIVRRKIKNKLSA 238
Query: 279 QNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRLKER 323
Q R+++ + I +L + + ++ H L A + L+++
Sbjct: 239 QESRRKRKEYIDALEGRLHCFSEENKSLKKQVHQLEASNRDLQQK 283
>U23179-10|AAN63446.1| 329|Caenorhabditis elegans Hypothetical
protein C27D6.4b protein.
Length = 329
Score = 37.9 bits (84), Expect = 0.012
Identities = 22/105 (20%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 219 QHLSRDEKRAKALGIPLEVQDIINLPMDEFNERLSKHDLSEAQLSLIRDIRRRGKNKVAA 278
QHL D+ + L ++ L + ++ K+ L++++ ++ +RR+ KNK++A
Sbjct: 216 QHLITDQNITANGDLVLSAEERRTLVQEGYSIP-QKYPLTKSEEESLKIVRRKIKNKLSA 274
Query: 279 QNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRLKER 323
Q R+++ + I +L + + ++ H L A + L+++
Sbjct: 275 QESRRKRKEYIDALEGRLHCFSEENKSLKKQVHQLEASNRDLQQK 319
>Z54216-9|CAA90948.1| 101|Caenorhabditis elegans Hypothetical
protein T24H10.7c protein.
Length = 101
Score = 35.9 bits (79), Expect = 0.049
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 269 RRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRLKERFAALY 328
R+R +N+ AA CR++K+D+I L ++V + R R + L E R E F
Sbjct: 31 RKRARNRQAATKCRQKKMDRIKELEEQVLHEKHRGQRLDAE----LLELNRALEHFRRTV 86
Query: 329 RH 330
H
Sbjct: 87 EH 88
>Z54216-8|CAI46586.1| 299|Caenorhabditis elegans Hypothetical
protein T24H10.7b protein.
Length = 299
Score = 35.9 bits (79), Expect = 0.049
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 269 RRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRLKERFAALY 328
R+R +N+ AA CR++K+D+I L ++V + R R + L E R E F
Sbjct: 229 RKRARNRQAATKCRQKKMDRIKELEEQVLHEKHRGQRLDAE----LLELNRALEHFRRTV 284
Query: 329 RH 330
H
Sbjct: 285 EH 286
>Z54216-7|CAB76416.2| 319|Caenorhabditis elegans Hypothetical
protein T24H10.7a protein.
Length = 319
Score = 35.9 bits (79), Expect = 0.049
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 269 RRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRLKERFAALY 328
R+R +N+ AA CR++K+D+I L ++V + R R + L E R E F
Sbjct: 249 RKRARNRQAATKCRQKKMDRIKELEEQVLHEKHRGQRLDAE----LLELNRALEHFRRTV 304
Query: 329 RH 330
H
Sbjct: 305 EH 306
>Z36238-10|CAL63999.1| 287|Caenorhabditis elegans Hypothetical
protein R74.3b protein.
Length = 287
Score = 34.7 bits (76), Expect = 0.11
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 269 RRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRL 320
RR+ KN+VAAQN R +K ++ + D +R + + R + ++ L + + L
Sbjct: 66 RRKLKNRVAAQNARDKKKERSAKIEDVMRDLVEENRRLRAENERLRRQNKNL 117
>Z36238-9|CAL63998.1| 335|Caenorhabditis elegans Hypothetical
protein R74.3a protein.
Length = 335
Score = 34.7 bits (76), Expect = 0.11
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 269 RRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRL 320
RR+ KN+VAAQN R +K ++ + D +R + + R + ++ L + + L
Sbjct: 66 RRKLKNRVAAQNARDKKKERSAKIEDVMRDLVEENRRLRAENERLRRQNKNL 117
>AF443191-1|AAL60201.1| 285|Caenorhabditis elegans X-box binding
protein processedisoform protein.
Length = 285
Score = 34.7 bits (76), Expect = 0.11
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 269 RRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRL 320
RR+ KN+VAAQN R +K ++ + D +R + + R + ++ L + + L
Sbjct: 66 RRKLKNRVAAQNARDKKKERSAKIEDVMRDLVEENRRLRAENERLRRQNKNL 117
>AF443190-1|AAL60200.1| 287|Caenorhabditis elegans X-box binding
protein unprocessedisoform protein.
Length = 287
Score = 34.7 bits (76), Expect = 0.11
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 269 RRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRL 320
RR+ KN+VAAQN R +K ++ + D +R + + R + ++ L + + L
Sbjct: 66 RRKLKNRVAAQNARDKKKERSAKIEDVMRDLVEENRRLRAENERLRRQNKNL 117
>AY835433-1|AAX37360.1| 331|Caenorhabditis elegans bZIP
transcription factor FOS-1b protein.
Length = 331
Score = 34.3 bits (75), Expect = 0.15
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 268 IRRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRLK 321
++RR +NK AA CR+R++D + L D+V ++ + + +++ + LK
Sbjct: 31 LKRRQRNKEAAARCRQRRIDLMKELQDQVNDFKNSNDKKMAECNNIRNKLNSLK 84
>AY835432-1|AAX37359.1| 467|Caenorhabditis elegans bZIP
transcription factor FOS-1a protein.
Length = 467
Score = 34.3 bits (75), Expect = 0.15
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 268 IRRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRLK 321
++RR +NK AA CR+R++D + L D+V ++ + + +++ + LK
Sbjct: 167 LKRRQRNKEAAARCRQRRIDLMKELQDQVNDFKNSNDKKMAECNNIRNKLNSLK 220
Score = 28.3 bits (60), Expect = 9.8
Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
Query: 155 PHSSHALLQGAVGPGFGVPERVRHNHTYSAPLAAPPHAPTVRDKRVRRLTDG---SASDG 211
P+ S L GP +P +N T++ + +P V+ V++ + G D
Sbjct: 98 PNISSPLTPHPFGPIPAIPTNQIYNRTFTDFYSTAASSPMVQYSTVKKSSAGRKPKEEDN 157
Query: 212 GSSCTSAQHLSRDEKRAKALGIPLEVQ-DIINLPMDEFNERLSKHDLSEAQLSLIRDIRR 270
+ L R ++ +A + + D++ D+ N+ + +D A+ + IR+
Sbjct: 158 MEDDDDDKRLKRRQRNKEAAARCRQRRIDLMKELQDQVNDFKNSNDKKMAECNNIRNKLN 217
Query: 271 RGKNKVAAQNCR 282
KN + +C+
Sbjct: 218 SLKNYLETHDCK 229
>AF016440-2|AAB65905.2| 331|Caenorhabditis elegans Abnormal
eversion of vulva protein5, isoform a protein.
Length = 331
Score = 34.3 bits (75), Expect = 0.15
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 268 IRRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRLK 321
++RR +NK AA CR+R++D + L D+V ++ + + +++ + LK
Sbjct: 31 LKRRQRNKEAAARCRQRRIDLMKELQDQVNDFKNSNDKKMAECNNIRNKLNSLK 84
>AF016440-1|ABA54419.1| 467|Caenorhabditis elegans Abnormal
eversion of vulva protein5, isoform b protein.
Length = 467
Score = 34.3 bits (75), Expect = 0.15
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 268 IRRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRLK 321
++RR +NK AA CR+R++D + L D+V ++ + + +++ + LK
Sbjct: 167 LKRRQRNKEAAARCRQRRIDLMKELQDQVNDFKNSNDKKMAECNNIRNKLNSLK 220
Score = 28.3 bits (60), Expect = 9.8
Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
Query: 155 PHSSHALLQGAVGPGFGVPERVRHNHTYSAPLAAPPHAPTVRDKRVRRLTDG---SASDG 211
P+ S L GP +P +N T++ + +P V+ V++ + G D
Sbjct: 98 PNISSPLTPHPFGPIPAIPTNQIYNRTFTDFYSTAASSPMVQYSTVKKSSAGRKPKEEDN 157
Query: 212 GSSCTSAQHLSRDEKRAKALGIPLEVQ-DIINLPMDEFNERLSKHDLSEAQLSLIRDIRR 270
+ L R ++ +A + + D++ D+ N+ + +D A+ + IR+
Sbjct: 158 MEDDDDDKRLKRRQRNKEAAARCRQRRIDLMKELQDQVNDFKNSNDKKMAECNNIRNKLN 217
Query: 271 RGKNKVAAQNCR 282
KN + +C+
Sbjct: 218 SLKNYLETHDCK 229
>AF016424-7|AAB65329.3| 520|Caenorhabditis elegans Hypothetical
protein F39G3.3 protein.
Length = 520
Score = 34.3 bits (75), Expect = 0.15
Identities = 14/69 (20%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 249 NERLSKHDLSEAQLSLIRDIRRRGKNK-VAAQNCRKRKLDQITSLADEVRTVRDRKLRTQ 307
N+R ++H++ + ++ ++ D+R++ K K + + ++K + +E + R+ R +
Sbjct: 337 NQRKARHEIGKIRVQVLDDMRKKEKEKDIKKREMERKKRHALQEKKEEAEAAKRREARKK 396
Query: 308 RDHHSLLAE 316
+ +S AE
Sbjct: 397 HEDYSKQAE 405
>AC006696-10|AAF39990.1| 228|Caenorhabditis elegans Hypothetical
protein W08E12.1 protein.
Length = 228
Score = 33.9 bits (74), Expect = 0.20
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 235 LEVQDIINLPMDEFNERLSKHDLSEAQLSLIRDIRRRGKNKVAAQNCRKRKLDQITSLAD 294
+ + D++++ M + L K S + L+ R+R +NKVAA R ++ + L D
Sbjct: 135 IPINDLVDIVMQTV-DNLKKEGSSNDETKLLS--RKRQQNKVAAARYRDKQKAKWQDLLD 191
Query: 295 EVRTVRDRKLRTQRDHHSLLAERQRLKERFAA 326
++ DR R + L E +++ F A
Sbjct: 192 QLEAEEDRNQRLKLQAGHLEKEVAEMRQAFLA 223
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 155 PHSS-HALLQGAVGPG-FGVPERVRHNHTYSAPLAAPPHAP 193
PHS L G+ G FG P H Y APL APP AP
Sbjct: 877 PHSPVPGALTGSQASGPFGAPPGAPHG--YGAPLQAPPQAP 915
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 29.5 bits (63), Expect = 4.2
Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 7/142 (4%)
Query: 196 RDKRVRRLTDGSASDGGSSCTSAQHLSRDEKRAKALGIPLEVQDIINLPMDEFNERLSKH 255
RD +R L D A+ + + E+ + L L+ ++ +++ +L +
Sbjct: 984 RDHNIRSLQDEMANQDEAVAKLNKEKKHQEESNRKLNEDLQSEEDKVNHLEKIRNKLEQQ 1043
Query: 256 DLSEAQLSLIRDIRRRG-----KNKVAAQ-NCRKRKLDQITSLADEVRTVRDRKLRTQRD 309
+ E + ++ R+ R RG K KV + +D+IT +V T RK
Sbjct: 1044 -MDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENIDEITKQKHDVETTLKRKEEDLHH 1102
Query: 310 HHSLLAERQRLKERFAALYRHV 331
++ LAE + + L + +
Sbjct: 1103 TNAKLAENNSIIAKLQRLIKEL 1124
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 29.5 bits (63), Expect = 4.2
Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 7/142 (4%)
Query: 196 RDKRVRRLTDGSASDGGSSCTSAQHLSRDEKRAKALGIPLEVQDIINLPMDEFNERLSKH 255
RD +R L D A+ + + E+ + L L+ ++ +++ +L +
Sbjct: 984 RDHNIRSLQDEMANQDEAVAKLNKEKKHQEESNRKLNEDLQSEEDKVNHLEKIRNKLEQQ 1043
Query: 256 DLSEAQLSLIRDIRRRG-----KNKVAAQ-NCRKRKLDQITSLADEVRTVRDRKLRTQRD 309
+ E + ++ R+ R RG K KV + +D+IT +V T RK
Sbjct: 1044 -MDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENIDEITKQKHDVETTLKRKEEDLHH 1102
Query: 310 HHSLLAERQRLKERFAALYRHV 331
++ LAE + + L + +
Sbjct: 1103 TNAKLAENNSIIAKLQRLIKEL 1124
>U58735-5|AAC48145.1| 210|Caenorhabditis elegans Hypothetical
protein F20B4.4 protein.
Length = 210
Score = 29.1 bits (62), Expect = 5.6
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 136 HQVAPPHVAGLQPALELNAPHSSHALLQGAVGP-GFGVPERVRHNHTYSAPLAAPPHAPT 194
H+ H+AGLQP LN +L+ + G V VRH++ + P H P+
Sbjct: 149 HKEVEAHLAGLQPQALLNEAKRDIVMLERELSSLGLPVTPHVRHDNVLT-PYVLTHHNPS 207
>U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 2, isoform b
protein.
Length = 965
Score = 29.1 bits (62), Expect = 5.6
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 180 HTYSAPLAAPPHAPTVRDKRVRRLTDGSASDGGSSCTSAQHLSRDEKRAKA 230
H S A PP A + +DK V+++ S G S + ++ ++KR +A
Sbjct: 784 HANSQKFAYPPRAESKKDKDVKKIETVVLSITGKKNASKKLIAEEKKRREA 834
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 29.1 bits (62), Expect = 5.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 337 DPEGRPLSSGQYSLQQAADGNVVLVP 362
DP G+PLS+ L +GN VLVP
Sbjct: 8585 DPSGKPLSADGSKLPTDINGNYVLVP 8610
Score = 28.7 bits (61), Expect = 7.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 337 DPEGRPLSSGQYSLQQAADGNVVLVP 362
DP G+PLS+ L +GN VLVP
Sbjct: 7811 DPSGKPLSADGSPLPTDINGNYVLVP 7836
Score = 28.7 bits (61), Expect = 7.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 337 DPEGRPLSSGQYSLQQAADGNVVLVP 362
DP G+PLS+ L +GN VLVP
Sbjct: 10348 DPSGKPLSADGSPLPTDINGNYVLVP 10373
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 29.1 bits (62), Expect = 5.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 337 DPEGRPLSSGQYSLQQAADGNVVLVP 362
DP G+PLS+ L +GN VLVP
Sbjct: 8630 DPSGKPLSADGSKLPTDINGNYVLVP 8655
Score = 28.7 bits (61), Expect = 7.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 337 DPEGRPLSSGQYSLQQAADGNVVLVP 362
DP G+PLS+ L +GN VLVP
Sbjct: 7856 DPSGKPLSADGSPLPTDINGNYVLVP 7881
Score = 28.7 bits (61), Expect = 7.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 337 DPEGRPLSSGQYSLQQAADGNVVLVP 362
DP G+PLS+ L +GN VLVP
Sbjct: 10393 DPSGKPLSADGSPLPTDINGNYVLVP 10418
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 29.1 bits (62), Expect = 5.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 337 DPEGRPLSSGQYSLQQAADGNVVLVP 362
DP G+PLS+ L +GN VLVP
Sbjct: 8630 DPSGKPLSADGSKLPTDINGNYVLVP 8655
Score = 28.7 bits (61), Expect = 7.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 337 DPEGRPLSSGQYSLQQAADGNVVLVP 362
DP G+PLS+ L +GN VLVP
Sbjct: 7856 DPSGKPLSADGSPLPTDINGNYVLVP 7881
Score = 28.7 bits (61), Expect = 7.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 337 DPEGRPLSSGQYSLQQAADGNVVLVP 362
DP G+PLS+ L +GN VLVP
Sbjct: 10393 DPSGKPLSADGSPLPTDINGNYVLVP 10418
>Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 28.7 bits (61), Expect = 7.4
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 16/129 (12%)
Query: 243 LPMDEFNERLSKHDLSEAQLSLIRDIRRRGKNKVAAQNCRKRKL-DQITSLADEVRTVRD 301
+ MD++N++L + L +AQ S V C+ + L DQ+TS +
Sbjct: 426 ITMDQYNQQLMRSQLDQAQQS------------VQVAGCQVQLLRDQLTSETTARLEAQS 473
Query: 302 RKLRTQRDHHSLLAERQRLKERFAALYRHVFQNLRDPEGRPLSSGQYSLQQAADGNVVLV 361
R + + LL + Q L R L + + +P Q+ + L
Sbjct: 474 RTHQLLSANRDLLEQVQNLVSRLQMLETKITSEIHHSSSQP---PQHQPIYQPSTSTPLN 530
Query: 362 PKMPQHQDH 370
PKMP DH
Sbjct: 531 PKMPLSIDH 539
>Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical
protein C33G3.1a protein.
Length = 793
Score = 28.7 bits (61), Expect = 7.4
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 16/129 (12%)
Query: 243 LPMDEFNERLSKHDLSEAQLSLIRDIRRRGKNKVAAQNCRKRKL-DQITSLADEVRTVRD 301
+ MD++N++L + L +AQ S V C+ + L DQ+TS +
Sbjct: 332 ITMDQYNQQLMRSQLDQAQQS------------VQVAGCQVQLLRDQLTSETTARLEAQS 379
Query: 302 RKLRTQRDHHSLLAERQRLKERFAALYRHVFQNLRDPEGRPLSSGQYSLQQAADGNVVLV 361
R + + LL + Q L R L + + +P Q+ + L
Sbjct: 380 RTHQLLSANRDLLEQVQNLVSRLQMLETKITSEIHHSSSQP---PQHQPIYQPSTSTPLN 436
Query: 362 PKMPQHQDH 370
PKMP DH
Sbjct: 437 PKMPLSIDH 445
>Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 28.7 bits (61), Expect = 7.4
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 16/129 (12%)
Query: 243 LPMDEFNERLSKHDLSEAQLSLIRDIRRRGKNKVAAQNCRKRKL-DQITSLADEVRTVRD 301
+ MD++N++L + L +AQ S V C+ + L DQ+TS +
Sbjct: 426 ITMDQYNQQLMRSQLDQAQQS------------VQVAGCQVQLLRDQLTSETTARLEAQS 473
Query: 302 RKLRTQRDHHSLLAERQRLKERFAALYRHVFQNLRDPEGRPLSSGQYSLQQAADGNVVLV 361
R + + LL + Q L R L + + +P Q+ + L
Sbjct: 474 RTHQLLSANRDLLEQVQNLVSRLQMLETKITSEIHHSSSQP---PQHQPIYQPSTSTPLN 530
Query: 362 PKMPQHQDH 370
PKMP DH
Sbjct: 531 PKMPLSIDH 539
>Z49128-6|CAA88957.1| 621|Caenorhabditis elegans Hypothetical
protein M03C11.7 protein.
Length = 621
Score = 28.7 bits (61), Expect = 7.4
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 250 ERLSKHDLSEAQLSLIRDIRRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRD 309
ERL KH+ A+ L D +R K K KL + TS A V R + L
Sbjct: 442 ERLKKHETLNAERKLTEDQKRAKKTK---------KLSEDTSTAVNVSVYRVKSLAHPSK 492
Query: 310 HHSLLAERQRLKERFAALYRHVFQNLRDPEGRP 342
+ ++L + A+ H QN+ EG P
Sbjct: 493 KFKVETNAKQL-QMSGAIMMHKAQNVIVVEGGP 524
>AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein
protein.
Length = 793
Score = 28.7 bits (61), Expect = 7.4
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 16/129 (12%)
Query: 243 LPMDEFNERLSKHDLSEAQLSLIRDIRRRGKNKVAAQNCRKRKL-DQITSLADEVRTVRD 301
+ MD++N++L + L +AQ S V C+ + L DQ+TS +
Sbjct: 332 ITMDQYNQQLMRSQLDQAQQS------------VQVAGCQVQLLRDQLTSETTARLEAQS 379
Query: 302 RKLRTQRDHHSLLAERQRLKERFAALYRHVFQNLRDPEGRPLSSGQYSLQQAADGNVVLV 361
R + + LL + Q L R L + + +P Q+ + L
Sbjct: 380 RTHQLLSANRDLLEQVQNLVSRLQMLETKITSEIHHSSSQP---PQHQPIYQPSTSTPLN 436
Query: 362 PKMPQHQDH 370
PKMP DH
Sbjct: 437 PKMPLSIDH 445
>Z93385-7|CAB07642.1| 843|Caenorhabditis elegans Hypothetical
protein F44F1.7 protein.
Length = 843
Score = 28.3 bits (60), Expect = 9.8
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 257 LSEAQLSLIRDIRRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAE 316
L+ + +++D+ + K+ VAA+N K Q + + V T Q+ H S + E
Sbjct: 16 LNRERSEMVKDLEKAQKDYVAARNMHKSTGSQ--NHLEVVNTCWKNVQAAQKAHQSKVEE 73
Query: 317 RQRLKERFAALYRHVFQ--NLRDPEGRPLSSGQYSL 350
++ FA R + ++++ E P S+ L
Sbjct: 74 FHMVRRSFADAVRESPESCSIKNRESNPSSTNDQDL 109
>Z81083-7|CAB03105.1| 843|Caenorhabditis elegans Hypothetical
protein F44F1.7 protein.
Length = 843
Score = 28.3 bits (60), Expect = 9.8
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 257 LSEAQLSLIRDIRRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAE 316
L+ + +++D+ + K+ VAA+N K Q + + V T Q+ H S + E
Sbjct: 16 LNRERSEMVKDLEKAQKDYVAARNMHKSTGSQ--NHLEVVNTCWKNVQAAQKAHQSKVEE 73
Query: 317 RQRLKERFAALYRHVFQ--NLRDPEGRPLSSGQYSL 350
++ FA R + ++++ E P S+ L
Sbjct: 74 FHMVRRSFADAVRESPESCSIKNRESNPSSTNDQDL 109
>Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical
protein F36G3.1 protein.
Length = 964
Score = 28.3 bits (60), Expect = 9.8
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 273 KNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRLKERFAALYRHVF 332
+ K +N R+ +LD IT EV +RD+ + + ER R R A + +
Sbjct: 762 RQKEIIENLRE-ELDAITKKLGEVTKLRDKAVEEATLYKMKNMERDRFLSREAQMSMEIE 820
Query: 333 QNLRDPEGRPLSSGQYSLQQAAD 355
R+ + L Q S+ + AD
Sbjct: 821 DLQRELNKQKLILNQTSMAKLAD 843
>AF039052-10|AAF98634.1| 536|Caenorhabditis elegans Hypothetical
protein T22D1.1 protein.
Length = 536
Score = 28.3 bits (60), Expect = 9.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 119 QAYHHEGLHM--HNDFGGRHQVAPPHVAGLQPALELN 153
+ Y+H +H H D RH V+ PH+ +Q L+ N
Sbjct: 342 ETYNHTWIHYSWHEDPNTRHNVSFPHLVHVQRPLQKN 378
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.132 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,039,197
Number of Sequences: 27539
Number of extensions: 374225
Number of successful extensions: 1529
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1271
Number of HSP's gapped (non-prelim): 272
length of query: 389
length of database: 12,573,161
effective HSP length: 83
effective length of query: 306
effective length of database: 10,287,424
effective search space: 3147951744
effective search space used: 3147951744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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