Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001764-TA|BGIBMGA001764-PA|undefined
         (104 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    21   2.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    19   7.9  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    19   7.9  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    19   7.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    19   7.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    19   7.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    19   7.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    19   7.9  

>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
          protein 10 protein.
          Length = 129

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 23 QPEGPQATKVLGEEIDKELLKAKDRIQKNY 52
          +P+    TK   + ID E +   DR+ KNY
Sbjct: 19 RPQEKYTTKY--DNIDLEEILKSDRLLKNY 46


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 69  LLDPEVKEGLQERQPQYSKSAFPKVGDNA 97
           L + +VK   Q R+ +Y K   P     A
Sbjct: 156 LSEKQVKIWFQNRRVKYKKEDLPAAAGKA 184


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 27  PQATKVLGEEIDKELLKAKDR 47
           P  TK++    DK+ ++AK R
Sbjct: 102 PGKTKMIAHLKDKKKIRAKKR 122


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 27  PQATKVLGEEIDKELLKAKDR 47
           P  TK++    DK+ ++AK R
Sbjct: 416 PGKTKMIAHLKDKKKIRAKKR 436


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 27  PQATKVLGEEIDKELLKAKDR 47
           P  TK++    DK+ ++AK R
Sbjct: 649 PGKTKMIAHLKDKKKIRAKKR 669


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 27  PQATKVLGEEIDKELLKAKDR 47
           P  TK++    DK+ ++AK R
Sbjct: 649 PGKTKMIAHLKDKKKIRAKKR 669


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
          transcription factor Maxillopediaprotein.
          Length = 523

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 69 LLDPEVKEGLQERQPQYSKSAFPKVGDN 96
          L + +VK   Q R+ ++ +    K GD+
Sbjct: 43 LTERQVKVWFQNRRMKHKRQTLGKQGDD 70


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 69  LLDPEVKEGLQERQPQYSKSAFPKVGDN 96
           L + +VK   Q R+ ++ +    K GD+
Sbjct: 174 LTERQVKVWFQNRRMKHKRQTLGKQGDD 201


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,185
Number of Sequences: 317
Number of extensions: 531
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 104
length of database: 114,650
effective HSP length: 49
effective length of query: 55
effective length of database: 99,117
effective search space:  5451435
effective search space used:  5451435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)
S2: 38 (19.4 bits)