GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001764-TA|BGIBMGA001764-PA|undefined
         (104 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)           29   0.71 
SB_42234| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.0  
SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  
SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)                    25   8.8  
SB_48186| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  
SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)                 25   8.8  
SB_4271| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.8  

>SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)
          Length = 1879

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 9  KQDVDMGFSLEDPIQPEGPQATKVLGEEIDKELLKAKDRIQK 50
          K+D +    LE  +Q    Q  + + E+++ EL  A++RIQK
Sbjct: 32 KEDKECALLLEQQVQARDLQRERKMVEKMNIELSNARERIQK 73


>SB_42234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 11  DVDMGFSLEDPIQPEGPQATKVLGEEIDKELLKAK 45
           + D+G SLED I  +G +AT    E + K  LK++
Sbjct: 246 NADVGNSLEDTITNDGIKATNNETEMLSKASLKSE 280


>SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 659

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 3   LIEVLWKQDVDMGFSLE---DPIQPEGPQATKVLGEEIDKELLKAKD 46
           L+E  WKQD+D+   +E   + I     + T+ +  E+  E+ +  D
Sbjct: 111 LLEEWWKQDIDLAEKIEGAKEEIISTSEKNTEKIVSELSAEVTRKSD 157


>SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1514

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 68   SLLDPEVKEGLQERQPQYSKSAFPKV 93
            S+L  E + G+Q+R+P Y   A P V
Sbjct: 1252 SVLKRETQFGMQDRRPLYENVASPSV 1277


>SB_48186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 3   LIEVLWKQDVDMGFSLE---DPIQPEGPQATKVLGEEIDKELLKAKD 46
           L+E  WKQD+D+   +E   + I     + T+ +  E+  E+ +  D
Sbjct: 183 LLEEWWKQDIDLAEKIEGAKEEIISTSEKNTEKIVSELSAEVTRKSD 229


>SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
          Length = 736

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 68 SLLDPEVKEGLQERQPQYSKSAFPKV 93
          S+L  E + G+Q+R+P Y   A P V
Sbjct: 24 SVLKRETQFGMQDRRPLYENVASPSV 49


>SB_4271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 3   LIEVLWKQDVDMGFSLE---DPIQPEGPQATKVLGEEIDKELLKAKD 46
           L+E  WKQD+D+   +E   + I     + T+ +  E+  E+ +  D
Sbjct: 318 LLEEWWKQDIDLAEKIEGAKEEIISTSEKNTEKIVSELSAEVTRKSD 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,304
Number of Sequences: 59808
Number of extensions: 77128
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 7
length of query: 104
length of database: 16,821,457
effective HSP length: 72
effective length of query: 32
effective length of database: 12,515,281
effective search space: 400488992
effective search space used: 400488992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)