GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001764-TA|BGIBMGA001764-PA|undefined
         (104 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF070064-1|AAC72898.1| 1296|Drosophila melanogaster cap 'n' coll...    32   0.16 
AE014297-3287|AAF56111.2| 1383|Drosophila melanogaster CG17894-P...    31   0.21 
BT003195-1|AAO24950.1| 1199|Drosophila melanogaster RE53824p pro...    29   1.5  
AY051885-1|AAK93309.1|  731|Drosophila melanogaster LD37351p pro...    29   1.5  
AE013599-1369|AAF58601.2| 1199|Drosophila melanogaster CG8290-PA...    29   1.5  
AY084104-1|AAL89842.1|  151|Drosophila melanogaster AT07554p pro...    27   4.5  

>AF070064-1|AAC72898.1| 1296|Drosophila melanogaster cap 'n' collar
           isoform C protein.
          Length = 1296

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 2   DLIEVLWKQDVDMGFSLEDPIQPEGPQAT 30
           ++ EVL+KQDVD+GFSL+      G  A+
Sbjct: 259 EIAEVLYKQDVDLGFSLDQEAIINGSYAS 287


>AE014297-3287|AAF56111.2| 1383|Drosophila melanogaster CG17894-PC,
           isoform C protein.
          Length = 1383

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 12/18 (66%), Positives = 17/18 (94%)

Query: 2   DLIEVLWKQDVDMGFSLE 19
           ++ EVL+KQDVD+GFSL+
Sbjct: 346 EIAEVLYKQDVDLGFSLD 363


>BT003195-1|AAO24950.1| 1199|Drosophila melanogaster RE53824p
           protein.
          Length = 1199

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 23  QPEGPQATKVLG-EEIDKELLKAKDRIQKNYXXXXXXXXXXXXXXASLLDPEVKEGLQER 81
           Q E PQ T ++    +  E   +K  +Q+N               ASLL+ EV EG  E 
Sbjct: 666 QQEQPQETAIMKITSVTSEA--SKKELQENNQADIDVAAFSSTILASLLEVEVNEGASEP 723

Query: 82  QP 83
           +P
Sbjct: 724 KP 725


>AY051885-1|AAK93309.1|  731|Drosophila melanogaster LD37351p
           protein.
          Length = 731

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 23  QPEGPQATKVLG-EEIDKELLKAKDRIQKNYXXXXXXXXXXXXXXASLLDPEVKEGLQER 81
           Q E PQ T ++    +  E   +K  +Q+N               ASLL+ EV EG  E 
Sbjct: 198 QQEQPQETAIMKITSVTSEA--SKKELQENNQADIDVAAFSSTILASLLEVEVNEGASEP 255

Query: 82  QP 83
           +P
Sbjct: 256 KP 257


>AE013599-1369|AAF58601.2| 1199|Drosophila melanogaster CG8290-PA,
           isoform A protein.
          Length = 1199

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 23  QPEGPQATKVLG-EEIDKELLKAKDRIQKNYXXXXXXXXXXXXXXASLLDPEVKEGLQER 81
           Q E PQ T ++    +  E   +K  +Q+N               ASLL+ EV EG  E 
Sbjct: 666 QQEQPQETAIMKITSVTSEA--SKKELQENNQADIDVAAFSSTILASLLEVEVNEGASEP 723

Query: 82  QP 83
           +P
Sbjct: 724 KP 725


>AY084104-1|AAL89842.1|  151|Drosophila melanogaster AT07554p
          protein.
          Length = 151

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 7  LWKQDVDMGFSLEDPIQPEGPQATKVLGEEIDKELLKAKDR 47
          +W++   +G S+ DP  P GP     LG     ELL+++DR
Sbjct: 5  VWQKVQYVGQSV-DPKLPSGPNYPSDLGAVCGGELLRSQDR 44


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.313    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,275,255
Number of Sequences: 52641
Number of extensions: 122189
Number of successful extensions: 214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 6
length of query: 104
length of database: 24,830,863
effective HSP length: 74
effective length of query: 30
effective length of database: 20,935,429
effective search space: 628062870
effective search space used: 628062870
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)