GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001764-TA|BGIBMGA001764-PA|undefined
         (104 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016684-13|AAB66203.1|  470|Caenorhabditis elegans Hypothetical...    29   0.62 
AF067948-7|AAC17699.1|  643|Caenorhabditis elegans Hypothetical ...    27   1.9  

>AF016684-13|AAB66203.1|  470|Caenorhabditis elegans Hypothetical
           protein F45C12.3 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 9/31 (29%), Positives = 22/31 (70%)

Query: 18  LEDPIQPEGPQATKVLGEEIDKELLKAKDRI 48
           ++DP +PE P+  +++G E  K+++K ++ +
Sbjct: 205 IKDPREPEKPKPERLMGPEPSKDMIKLEEPV 235


>AF067948-7|AAC17699.1|  643|Caenorhabditis elegans Hypothetical
           protein T27C4.2 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/67 (22%), Positives = 31/67 (46%)

Query: 31  KVLGEEIDKELLKAKDRIQKNYXXXXXXXXXXXXXXASLLDPEVKEGLQERQPQYSKSAF 90
           ++LGEEI+K +   +  I+++                  +D E+++ L+E   Q   S  
Sbjct: 279 RILGEEIEKSVENLEKDIEESVKNGSEKMNDKTAQAVEQIDLELEKRLEEAAKQLQDSLT 338

Query: 91  PKVGDNA 97
             VG+++
Sbjct: 339 NLVGNSS 345


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,697
Number of Sequences: 27539
Number of extensions: 60838
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 2
length of query: 104
length of database: 12,573,161
effective HSP length: 71
effective length of query: 33
effective length of database: 10,617,892
effective search space: 350390436
effective search space used: 350390436
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)