GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001764-TA|BGIBMGA001764-PA|undefined
         (104 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80380.2 68414.m09410 phosphoribulokinase/uridine kinase-rela...    29   0.78 
At4g30570.1 68417.m04338 GDP-mannose pyrophosphorylase, putative...    25   9.6  

>At1g80380.2 68414.m09410 phosphoribulokinase/uridine kinase-related
          Length = 456

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 75  KEGLQERQPQYSKSAFPKVGDNA 97
           KEGL+ + P+Y+KSA+   GD A
Sbjct: 293 KEGLKMKVPRYNKSAYSGRGDRA 315


>At4g30570.1 68417.m04338 GDP-mannose pyrophosphorylase, putative
           similar to GDP-mannose pyrophosphorylase [Arabidopsis
           thaliana] GI:3598958; contains Pfam profile PF00483:
           Nucleotidyl transferase
          Length = 331

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 69  LLDPEVKEGLQERQPQYSKSAFPKVGDNALFWAL 102
           LL P V + ++ R+    K  FPK+      +A+
Sbjct: 159 LLSPSVLDRIELRRTSIEKEIFPKIASEKKLYAM 192


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,495
Number of Sequences: 28952
Number of extensions: 62043
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 2
length of query: 104
length of database: 12,070,560
effective HSP length: 71
effective length of query: 33
effective length of database: 10,014,968
effective search space: 330493944
effective search space used: 330493944
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)