GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001763-TA|BGIBMGA001763-PA|undefined
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    33   0.067
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    33   0.088
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    30   0.47 
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    29   1.4  
SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch...    29   1.4  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    28   2.5  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   4.4  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    27   4.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   4.4  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    27   5.8  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   7.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.6  

>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 33.1 bits (72), Expect = 0.067
 Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 10/142 (7%)

Query: 76  ERQLFEELNSLGRYGPSAHNARMWQNR-----GPILHTYLLNDVATGAVEPVSAAQSVAT 130
           E  L E +  +G   P   +A++W        G  ++ Y  +D     V  V++AQS A 
Sbjct: 415 ETNLVENVIVMG--APMPTDAKLWLKMRCVVAGRFVNVYSASDYVLQLVYRVNSAQSTAA 472

Query: 131 DQDAVSADDNVAQEVKVTD-EDAQDQSRESTVTVSDNFLHNRTESDIFPEIASRTFDVTE 189
               VS D N  + V V D  +   Q R     +    L     SD   EI S      +
Sbjct: 473 GLGPVSLDSNTLENVDVGDLVEGHLQYRWLVAKILKERLGYDNISD--AEIQSLAVQEEK 530

Query: 190 FLVQQDNMQIKKEQDEAFDLKV 211
           +  +Q     +KEQ+E  + +V
Sbjct: 531 YESKQRTYYSQKEQEEEIEQEV 552


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 32.7 bits (71), Expect = 0.088
 Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 6/142 (4%)

Query: 119  VEPVSAAQSVATDQDAVSADDNVAQEVKVTDEDAQDQSRESTVTVSDNFLHNRTESDIFP 178
            VE  S  QS  ++ +  S DD  ++EV+  +    +   E    +  N       S +F 
Sbjct: 1326 VEMRSEDQSDTSESEVGSKDDVQSEEVENLESAGDEDEEEEPSALQANGFDWTDGSTVFD 1385

Query: 179  EIASRTFDVTEFLVQQDNMQIKKEQDEAFDLKVNESNTDDFYSDNAIDF-ATYFAARSEK 237
            ++A  T D  +   + +  + KK + + FD   +E    D     A DF     ++ +  
Sbjct: 1386 KLADDTEDSED--EEDEEPKRKKSKSDRFD---DEEKDLDEIPSTAADFERQLLSSPNSS 1440

Query: 238  IEVEEPNLYHQNMADLQDYGDV 259
            +       YH N+ +LQ+  +V
Sbjct: 1441 LLWISYMAYHLNLNELQEAREV 1462


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 9/105 (8%)

Query: 129 ATDQDAVSADDNVAQEVKVTDEDAQDQSRESTVTVSDN-------FLHNRTESDIFPEIA 181
           AT ++  S+D N+     V  E +   S +STV++           L + T+S++F E  
Sbjct: 773 ATSRELASSDRNINTGTSVASEVSASVSEQSTVSLPREKMSVFMARLASLTKSELFSEEC 832

Query: 182 SRTFDVTEFLVQ-QDNMQIKKEQDEAFDLKVNESNTDDFYSDNAI 225
           +   DV E +   +D++   +E +    LK  ++     +SDN +
Sbjct: 833 ASLEDVLESINNIEDDVGFSRE-EAIVALKEMDAQNKIMFSDNVV 876


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 181 ASRTFD-VTEFLVQQDNMQIKKEQDEAFDLKVNESNTDDFYSDNAIDFATYFAARSEKIE 239
           +SRT D V  +L      + K E    +  + N+  + D YSD   +F +Y+ + S  + 
Sbjct: 320 SSRTMDDVVRWLFSSGKRRQKYESSYPYQTQSNQIPSQDQYSDTDSNFLSYYFSASGPMY 379

Query: 240 VEE 242
           V +
Sbjct: 380 VPQ 382


>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 129

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 158 ESTVTVSDNFLHNRTESDIFPEIASRTFDVTEFL 191
           E T+TV +   HN T  D++  +  + +D+++FL
Sbjct: 3   EKTITVEEVLKHN-TRDDLYIVVKDKVYDISKFL 35


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 22/113 (19%), Positives = 47/113 (41%), Gaps = 1/113 (0%)

Query: 112 NDVATGAVEPVSAAQSVATDQDAVSADDNVAQEVKVTDEDAQDQSRESTVTVSDNFLHNR 171
           ND ++ + +  S + S  +D  + S+D       + +D  +   S ES  +  DN   + 
Sbjct: 126 NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDND-SSS 184

Query: 172 TESDIFPEIASRTFDVTEFLVQQDNMQIKKEQDEAFDLKVNESNTDDFYSDNA 224
           + SD   E +S   D +      ++    +  D +     +ES +    +D++
Sbjct: 185 SSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSS 237


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 9/118 (7%)

Query: 143 QEVKVTDEDAQDQSRESTVTVSDNFLHNRTESDIFPEIASRTFDVTEFLVQQDNMQIKKE 202
           +EV   DE+   +  E     SDN +   + S +  E    + D  +F  +++    KKE
Sbjct: 608 EEVSQDDEEGDFEDLEDEENSSDNEMEESSGSSVTAE-NEESADEVDFQTEREENARKKE 666

Query: 203 Q----DEAFDLKVNESNTDDFYSDNAIDFATYFAARSEKIEVEEPNLYHQNMADLQDY 256
           +     E  D    E    D+Y++     A       E  E  +P    ++ A+++ Y
Sbjct: 667 ELRLRFEEEDRGDPEKKDVDWYTEEKEKIARQLVINREAFEDMDP----ESRAEIEGY 720


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 240 VEEPNLYHQNMADLQDYGDVFTDDPDLKHDLE 271
           +EE +L   N  D +D  D +TD+ DL  D E
Sbjct: 339 LEEGDLSDFNQMDEEDSEDAYTDEEDLSSDDE 370


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 10/158 (6%)

Query: 122 VSAAQSVATDQDAVSADDNVAQE-VKVTDEDAQDQSRESTVTVSDNFLHNRTESDIFPEI 180
           VS   S+ T  D        +QE  +  + D    S  S+  + +N    R+  D   EI
Sbjct: 6   VSNTLSIETKSDPKDPAFVASQESTECNEHDTTQLSGSSSEPLENNSSLTRSTDDPSVEI 65

Query: 181 ASRTF--DVTEFLVQQDNMQIKKEQ-------DEAFDLKVNESNTDDFYSDNAIDFATYF 231
            S+    D    L+   N+ I  E        +EA     NE+  D+  S +A      F
Sbjct: 66  RSKLVSPDNEANLLSDQNITISNENNNENDTTEEAETSSGNEAADDEDSSSDAQSSVPSF 125

Query: 232 AARSEKIEVEEPNLYHQNMADLQDYGDVFTDDPDLKHD 269
           +   + +  EE +   + +  L+       DDP++  D
Sbjct: 126 SEIHDGMSEEELDKERKTLTHLRRISLQGADDPEIPTD 163


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 157 RESTVTVSDNFLHNRTESDIFPEIASRTFDVTEFLVQQDNMQIKKEQDEAFDLKVNESNT 216
           +ES  +  DNF   +T++    E +  T  +   ++  DN   KKE+  A  LK+++ ++
Sbjct: 52  KESQFSSRDNFRTTQTQASSSSEPSDNTNRLVPVVI-IDNNTPKKEESNAEKLKLDKDSS 110

Query: 217 DDFYSD 222
              Y +
Sbjct: 111 SVNYEN 116


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 98  MWQNRGPILHTYLLNDV----ATGAVEPVSAAQSVATDQDAVSADDNVAQEVKVTDEDAQ 153
           +W+N  P L T L N      A+G     S+ QS+  D  A S   +     +  DE ++
Sbjct: 300 IWKNTHPFLTT-LANGHGVMDASGNHHSGSSNQSINADSSAGSEGVDEGTSTEANDESSE 358

Query: 154 DQSRESTVTVSDNFLHNRTESDIFPEIASRTFDVTEFLVQQDNMQIKKEQDEAFD 208
           D   ++    ++    +   SD  P+    +   ++ +V  D   +KK  ++  D
Sbjct: 359 DDDEDNNTDEANEDAQSNV-SDESPKGEGSSH--SDNVVLSDGNSVKKMNEDGAD 410


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 59   RPRFVHPKSLDNILVNYERQLFEELNSLGRY 89
            RP+F+H +     L  ++ Q F+E+   G+Y
Sbjct: 3238 RPKFLHLEQCSLYLSEFQHQKFDEVEIPGQY 3268


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,628,429
Number of Sequences: 5004
Number of extensions: 67082
Number of successful extensions: 202
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 17
length of query: 379
length of database: 2,362,478
effective HSP length: 74
effective length of query: 305
effective length of database: 1,992,182
effective search space: 607615510
effective search space used: 607615510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)