Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001763-TA|BGIBMGA001763-PA|undefined
(379 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0146 - 31976538-31978643,31978653-31978751 36 0.071
10_08_0412 - 17729765-17730283,17731256-17731726 35 0.094
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 32 0.66
05_04_0092 + 17851085-17851346,17852778-17852860,17853891-178539... 31 2.0
01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377... 30 2.7
05_06_0189 + 26257587-26257791,26257962-26258003,26258064-262584... 30 3.5
03_05_0625 - 26225201-26225879,26226706-26227553 30 3.5
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 6.2
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 8.1
01_03_0182 + 13537522-13539699 29 8.1
>03_06_0146 - 31976538-31978643,31978653-31978751
Length = 734
Score = 35.5 bits (78), Expect = 0.071
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 130 TDQDAVSADDNVAQEVKVTDEDAQDQSRESTVTVSDNFLHNRTESDIFPEIASRTFDVTE 189
+D+D S D+ E ++ DE+ D+S E + + D + S +F + + + E
Sbjct: 229 SDEDTESTDEESDYEEEIDDEEIDDESVEEDINLDDELM--GFASGLFGDDDTESSHDEE 286
Query: 190 FLVQQDNMQIKKEQDEAF---DLKVNESNTDDFYSDNAID 226
L D+ + + E F D+ E+ D+ + D +D
Sbjct: 287 DLDDDDDESLDDDGSECFDEEDIICAENLDDEIFDDEYVD 326
>10_08_0412 - 17729765-17730283,17731256-17731726
Length = 329
Score = 35.1 bits (77), Expect = 0.094
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 117 GAVEPVSAAQSVATDQ-DAVSADDNVAQEVKVTDEDAQDQSRESTVTVSDNFLHNRTESD 175
GA++P + V + DAV DDN + K+T+++A+ SR S S R +
Sbjct: 75 GALQPCQGWKKVRRKRLDAVK-DDNNGENAKITNKNARKVSRRSAPKNSG----KRKLDN 129
Query: 176 IFPEI-ASRTFDVTEFLVQQDNMQIKKEQDEAFDLKVNESNT 216
+ PE+ +S + D L +D + I +E +A LK +E T
Sbjct: 130 VEPEVSSSESIDDDIELTVEDLLSIAEEYVKADRLKQHEVKT 171
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 32.3 bits (70), Expect = 0.66
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 104 PILHTYLLNDVATGAVEPVSAAQSVATDQDAVSADDNVAQEVKVTDEDAQDQSR----ES 159
P LH +N+++ E VSA Q + + + +D +E+K D + + E+
Sbjct: 380 PFLHDGDVNEISQETAEQVSAEQGTSRVTEKMEVEDK-TKEIKTNDRKTAAKPKLNLTET 438
Query: 160 TVTVSDNFLHN---RTESDIFPEIASRT 184
V + DN + N ++ DI ++ S T
Sbjct: 439 EVNLDDNVVANNDTKSSGDINVDVCSNT 466
>05_04_0092 +
17851085-17851346,17852778-17852860,17853891-17853942,
17854054-17854179,17854291-17854373,17855127-17855309,
17855731-17855947,17856156-17856299,17856375-17856446,
17857166-17857230,17857517-17857584,17857968-17858007,
17858843-17859013
Length = 521
Score = 30.7 bits (66), Expect = 2.0
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 21/135 (15%)
Query: 96 ARMWQNRGPILHTYLLNDVATG--------AVEPVSAAQSVATDQDAVSADDNVAQEVKV 147
A +Q G +L + D ATG + + ++AQ+ + + + AQ K
Sbjct: 357 AGAFQGFGRVLSAKVFVDKATGLSKCFGFISYDSPASAQTAISMMNGYQLGERFAQGTKF 416
Query: 148 TDEDAQDQSRESTVTVSD---------NFLHNRTESDI----FPEIASRTFDVTEFLVQQ 194
T + A S+E T S + T SDI E+ +T ++ ++VQQ
Sbjct: 417 TQKTAARNSQEKTDRASPVQQQKGPATSLALTTTHSDIQYMRHLEVVEQTVEIYIWVVQQ 476
Query: 195 DNMQIKKEQDEAFDL 209
+N+Q+++ AF L
Sbjct: 477 ENVQVQETDTNAFFL 491
>01_05_0619 -
23737178-23737378,23737460-23737516,23737597-23737755,
23739477-23739621,23739725-23740136,23740693-23740855
Length = 378
Score = 30.3 bits (65), Expect = 2.7
Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 5/132 (3%)
Query: 80 FEELNSLGR-YGPSAHNARMWQNRGPILHTYLLNDVATGAVEPVSAAQSVATDQDAVSAD 138
+E + GR YG A N G + L + VS + Q+ V
Sbjct: 160 YERRSGTGRGYGMKREGAGRG-NWGTVTDEALAQESGEAVSIEVSVTVTEENKQEDVPQS 218
Query: 139 DNVAQEVKVT---DEDAQDQSRESTVTVSDNFLHNRTESDIFPEIASRTFDVTEFLVQQD 195
D V + + +E+ + + +E T+ + L + ++ + ++ R V + L
Sbjct: 219 DEVEKHKEGESNEEEEKEPEDKEMTLEEYEKVLEEKRKALLSLKVEERKVVVDKELQSMQ 278
Query: 196 NMQIKKEQDEAF 207
+ +KK+ DE F
Sbjct: 279 QLSVKKDSDEVF 290
>05_06_0189 +
26257587-26257791,26257962-26258003,26258064-26258436,
26258515-26258656,26259356-26259514,26259599-26259661,
26259992-26260180
Length = 390
Score = 29.9 bits (64), Expect = 3.5
Identities = 16/88 (18%), Positives = 37/88 (42%)
Query: 120 EPVSAAQSVATDQDAVSADDNVAQEVKVTDEDAQDQSRESTVTVSDNFLHNRTESDIFPE 179
E + + A AD+N + +E+ +++ +E T+ + + ++ + +
Sbjct: 217 EKAPVTEKQGAPEGAPQADENKDNKDVTPNEEEKEEDKEMTLEEFEKLREEKRKALLSLK 276
Query: 180 IASRTFDVTEFLVQQDNMQIKKEQDEAF 207
R ++ + L + KKE DE F
Sbjct: 277 TEERKVEIDKDLKSMQPLSNKKENDEVF 304
>03_05_0625 - 26225201-26225879,26226706-26227553
Length = 508
Score = 29.9 bits (64), Expect = 3.5
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 169 HNRTESDIFPEIASRTFDVTEFLVQQDNMQIKKEQDEAFDLKVNESNTDD 218
H +FP R + + + L ++D+ +KE DE D + + DD
Sbjct: 345 HENNLDSVFPRQTRRRWMLLQDLDKKDSTTFRKEHDEEIDFEWSSDGDDD 394
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 29.1 bits (62), Expect = 6.2
Identities = 29/153 (18%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 126 QSVATDQDAVSADDNVAQEVKVTDEDAQDQSRESTVTVSDNFLHNRTESDIFPEIASRTF 185
QS+ + + + V ++ + + + + + + L E D
Sbjct: 1466 QSLVERNNLIQKWEEVLGQISIPQQFRMLEPEDRIAWLGNRLLEVEHERDALHLKIEHLE 1525
Query: 186 DVTEFLVQQDNMQIKKEQDEAFDLKVNESNTDDFYSDNAIDFATYFAARSEKIEVEE--- 242
D +E L+ K+ + + ++ ++ + F+S + F SEK +E
Sbjct: 1526 DSSEMLISDLEESHKRISELSAEIVAVKAEKE-FFSQSLEKLRFDFLGLSEKAVQDEFVR 1584
Query: 243 PNLYHQNMADLQDYGDVFTDDPDLKHDLELDIK 275
NL +++A+LQ+ T++ L HD+E++IK
Sbjct: 1585 DNL-RKDLAELQEKLAEKTEESKLYHDMEMEIK 1616
>02_01_0246 +
1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 28.7 bits (61), Expect = 8.1
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 111 LNDVATGAVEPVSAAQSVATDQDAVSADDNVAQEVKVTDEDAQD-QSRESTVTVSDN 166
+ D ++ +S +++AT ++ DD A+ ++ QD +S E T DN
Sbjct: 582 VKDTEAAEIQEISQERTIATSKEDAVEDDGTAEGPTCVSQEVQDVESEEVKDTEPDN 638
>01_03_0182 + 13537522-13539699
Length = 725
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 152 AQDQSRESTVTVSDNFLHNRTESDIFPEI--ASRTFDVTEFLVQQDNMQIKKEQDEAFDL 209
A +S + + S+ + E + E+ A+R+ D+ + +V+Q +I + DE +
Sbjct: 202 ANSESEDEEIVESEEAARSVREDEEAVELEKATRSVDIDQEIVEQKEYKILIKDDEVVEP 261
Query: 210 KVNESNTDD 218
K N+ +T++
Sbjct: 262 KENKISTEN 270
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.132 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,507,096
Number of Sequences: 37544
Number of extensions: 367562
Number of successful extensions: 793
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 15
length of query: 379
length of database: 14,793,348
effective HSP length: 83
effective length of query: 296
effective length of database: 11,677,196
effective search space: 3456450016
effective search space used: 3456450016
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)
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