Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001762-TA|BGIBMGA001762-PA|IPR013053|Hormone binding
         (167 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.37 
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)                   31   0.49 
SB_46678| Best HMM Match : GatB_Yqey (HMM E-Value=1.9)                 30   0.85 
SB_39694| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 30   1.1  

>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 44  LDAGKYDLSVTALGFTIYGNGEAKIRVIRPRIKATLLIHLNIREGMALNLQEADVAISLE 103
           +DAG  D S+   GF +Y NG         RI ATL   +  R    ++ Q   V IS  
Sbjct: 150 IDAGSDDKSLVHKGFRVYPNGNV---TFSTRISATLSCKMEFR-NFPMDRQSCPVTISSY 205

Query: 104 GF-QTEITGIFND 115
            F + EI  I+ D
Sbjct: 206 FFPEDEIYYIWGD 218


>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 612

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 25  SVLRGLFGLSIDGEVPVIALDAGKYDLSVTALGFTIYGNGEAKIRVIRPRIKAT 78
           +++  LFGL +D  VP IAL+  K    +      +  + +  I++ +PR K+T
Sbjct: 137 NLILNLFGLMVDASVPDIALEPDKTVKKINVY-LALKNSSQTIIQMFKPRRKST 189


>SB_46678| Best HMM Match : GatB_Yqey (HMM E-Value=1.9)
          Length = 235

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 11/113 (9%)

Query: 47  GKYDLSVTALGFTIY----GNGEAKIRVIRPRIKATLLIHLNIREGMALNLQEADVAISL 102
           G+ D+  +A+  T++       +AK+  +  +    L+ H  +RE     ++   +  S 
Sbjct: 96  GQDDVRKSAVELTLFVLQNRETQAKVSKVAAQTLKDLINHPEMREIFLEYIKRLLLDEST 155

Query: 103 EGFQTEIT-GIFNDPVLSEFVSRFLGNLVP------ELLEVFETEINEIVTDI 148
           +    ++  G+ NDPV+ +F+    G+LV       + +E+ +T  +E+V+DI
Sbjct: 156 KDVCKDLLQGVINDPVVKKFMEESFGDLVASSVVRNKAVELGKTVTHEVVSDI 208


>SB_39694| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 893

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 72  RPRIKATLLIHLNIREGMALNLQEADVAISLEGFQTEITGIFNDPVLSE 120
           RP  KA L     I +   +  Q+       +G+QTEI  IFN+  L E
Sbjct: 332 RPTFKAVLEALEEISDSALMETQQESFQSMQDGWQTEIEQIFNELKLKE 380


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.145    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,381,704
Number of Sequences: 59808
Number of extensions: 153246
Number of successful extensions: 349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 5
length of query: 167
length of database: 16,821,457
effective HSP length: 77
effective length of query: 90
effective length of database: 12,216,241
effective search space: 1099461690
effective search space used: 1099461690
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)