Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001762-TA|BGIBMGA001762-PA|IPR013053|Hormone binding
         (167 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,...    29   1.2  
At5g03670.1 68418.m00326 expressed protein                             29   1.6  
At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138...    27   6.5  
At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138...    27   6.5  
At5g54440.1 68418.m06780 expressed protein                             27   8.5  
At4g21230.1 68417.m03070 protein kinase family protein contains ...    27   8.5  

>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
           putative similar to EF-1-alpha-related GTP-binding
           protein gi|1009232|gb|AAA79032
          Length = 532

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 103 EGFQTEITGIFNDPVLSEFVSRFLGNLVPELLE-VFETEINEIVTDIFF 150
           E  +  ITGI ++ +LS FV   + N VP + E V + +I E++ +  F
Sbjct: 389 ENLRVRITGIEDEDILSGFVLSSIVNPVPAVTEFVAQLQILELLDNAIF 437


>At5g03670.1 68418.m00326 expressed protein
          Length = 516

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/29 (41%), Positives = 22/29 (75%), Gaps = 2/29 (6%)

Query: 138 ETEINEIVTDIFFEIAQDIIKDL--DLGG 164
           + +++E V DI FEI +D++++L  D+GG
Sbjct: 486 DADVSETVLDIEFEIFEDLVEELSEDIGG 514


>At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 351

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 71  IRPRIKATLLIHLNIREGMALNLQEADVAISLEGFQTEITGIFNDPVL--SEFVSRFLGN 128
           + P     +L  LNI     + L   D  + +EGF +  T +F   VL   E  +R  GN
Sbjct: 202 LTPNETVLMLQSLNIPTSTNIYLAAGDGLMEMEGFTSVYTNVFTKSVLLNQEDFTRMHGN 261


>At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 439

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 71  IRPRIKATLLIHLNIREGMALNLQEADVAISLEGFQTEITGIFNDPVL--SEFVSRFLGN 128
           + P     +L  LNI     + L   D  + +EGF +  T +F   VL   E  +R  GN
Sbjct: 290 LTPNETVLMLQSLNIPTSTNIYLAAGDGLMEMEGFTSVYTNVFTKSVLLNQEDFTRMHGN 349


>At5g54440.1 68418.m06780 expressed protein
          Length = 829

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 32  GLSIDGEVPVIALDAGKYDLSVTA 55
           G+ +DGE+  +    GKYDL+  +
Sbjct: 158 GVVLDGEIAAVCFKHGKYDLAANS 181


>At4g21230.1 68417.m03070 protein kinase family protein contains
          Pfam domain, PF00069: Protein kinase domain
          Length = 642

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 16 INSLTFDIISVLRGLFGLSIDGEVPVIALDAG 47
          I+SL  D+   + G + +SI+GEV  IAL  G
Sbjct: 55 ISSLP-DLTPTINGFYNISINGEVNAIALCRG 85


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.145    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,383,015
Number of Sequences: 28952
Number of extensions: 126905
Number of successful extensions: 332
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 6
length of query: 167
length of database: 12,070,560
effective HSP length: 76
effective length of query: 91
effective length of database: 9,870,208
effective search space: 898188928
effective search space used: 898188928
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)