GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001762-TA|BGIBMGA001762-PA|IPR013053|Hormone binding
         (167 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0583 + 24078766-24079800,24080585-24081643                       33   0.16 
08_01_0040 - 287030-287569,287981-288196,288269-288535                 31   0.36 
02_01_0777 - 5785295-5787370,5787723-5788769                           31   0.36 
12_02_1034 - 25562214-25562280,25562661-25562794,25562990-255631...    30   1.1  
04_04_1037 + 30316557-30316692,30317104-30317180,30317287-303173...    29   1.9  

>02_04_0583 + 24078766-24079800,24080585-24081643
          Length = 697

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 115 DPVLSEFVSRFLGNLVPELLEVFETEINEIVTDIFFEIAQDII 157
           DP+L EF++RF+  L P L   F T    ++ ++   +A+ ++
Sbjct: 75  DPLLDEFLARFVAALRPTLAAAFPTHARHVLDEMLRLVAEAVL 117


>08_01_0040 - 287030-287569,287981-288196,288269-288535
          Length = 340

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 11/127 (8%)

Query: 37  GEVPVIALDAGKYDLSVTALGFTIYGNGEAKIRVIRPRIKATLLIHLNIREGMALNLQEA 96
           G VP + + + +     T + F+ YG+   +I+ I   +   LL    IR       QE 
Sbjct: 75  GTVPTLVVSSSRMAQGATDVAFSPYGDYWRQIKKI---VTTNLLTIKKIRSYSQTRQQEV 131

Query: 97  DVAISLEGFQTEITGIFNDPVLSEFVSRFLGNLVPELLEVFETEINEIVTDIFFEIAQDI 156
            + ++ +  +   T +  D  L+E +S +  N+ P+++   + E+  +V+       QDI
Sbjct: 132 RLVMA-KIVEEAATHMAID--LTELLSCYSNNMKPQMIAKLQAEVRGVVSK-----GQDI 183

Query: 157 IKDLDLG 163
           + +  LG
Sbjct: 184 VTEEHLG 190


>02_01_0777 - 5785295-5787370,5787723-5788769
          Length = 1040

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 79  LLIHLNIREGMALNLQEADVAISLEGFQTEITGIFNDPVLSE-FVSRFL-GNLVPELLEV 136
           LL+  N+  G+AL LQ  D+  +     T    +       E +V RFL  N+V EL+++
Sbjct: 822 LLLGSNMSNGLALLLQRRDIESNQVRSHTAFLVMKLACTGGEPYVHRFLEANIVHELIDM 881

Query: 137 FETEINEIVTDIFFEIAQDI 156
            +  IN++    ++ + Q I
Sbjct: 882 MQCNINDLQDSAYYALHQII 901


>12_02_1034 -
           25562214-25562280,25562661-25562794,25562990-25563109,
           25563331-25563510,25563847-25564020,25564466-25564639,
           25564734-25564827,25566088-25566242
          Length = 365

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/41 (29%), Positives = 25/41 (60%)

Query: 97  DVAISLEGFQTEITGIFNDPVLSEFVSRFLGNLVPELLEVF 137
           DVA +L+  +TE+ G + D  L + +  F+ N++   ++V+
Sbjct: 187 DVAKNLDSLKTELAGKYGDAELGQSIFTFVVNVIESAIKVW 227


>04_04_1037 +
           30316557-30316692,30317104-30317180,30317287-30317353,
           30317761-30317813,30317906-30318322
          Length = 249

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 50  DLSVTALGFTIY--GNGEAKIRVIRPRIKATLLIHLNIREGMALN 92
           +L V  LGF +Y  G+ E+K     P+ +  LL+ LNI+ G  L+
Sbjct: 187 NLKVNNLGFQLYHLGSQESKDVKCTPKTEELLLLDLNIQGGYELS 231


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.145    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,013,924
Number of Sequences: 37544
Number of extensions: 147135
Number of successful extensions: 327
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 5
length of query: 167
length of database: 14,793,348
effective HSP length: 77
effective length of query: 90
effective length of database: 11,902,460
effective search space: 1071221400
effective search space used: 1071221400
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)