GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001762-TA|BGIBMGA001762-PA|IPR013053|Hormone binding
         (167 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77662-3|CAB01194.1|  284|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z71262-9|CAA95817.2|  440|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AY037797-1|AAK94762.1|  412|Caenorhabditis elegans GLY-18 protein.     28   3.0  
Z46996-1|CAA87099.1|  472|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z77662-3|CAB01194.1|  284|Caenorhabditis elegans Hypothetical
           protein F47B8.3 protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 26  VLRGLFGLSIDGEVPVIALDAGKYDLSVTALGFTIYGNGEAKIRVIRPRIKATLLIHLNI 85
           ++RG+FG S +   P +  +AG+ DL V     T+  +   ++R+   + ++      + 
Sbjct: 1   MMRGVFGKSPEKLKPELESEAGEEDLGVK---LTVLRDAMIQMRIQFLQFQSVFKFWDSN 57

Query: 86  REGMALNLQEADVAISLEGFQTEITGIFNDPVLSEFVSRFLGNLVPELLEVFETEINEIV 145
            +    +L+   + +++   Q  I  + N  V SE++      L    L+ F+  +N IV
Sbjct: 58  EDKFVNDLKALKIIVTV--VQNRIEDLRN--VASEYIELQNSQLAKRKLDKFDDILNLIV 113

Query: 146 TDI 148
            +I
Sbjct: 114 LEI 116


>Z71262-9|CAA95817.2|  440|Caenorhabditis elegans Hypothetical
           protein F22D6.11 protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 129 LVPELLEVFETEINEIVTDIFFEIAQDIIKDLDL 162
           LVP +LE   +  N   T I  +I  D++ DLD+
Sbjct: 29  LVPRILESLNSSRNPQETSILSKIENDLLDDLDI 62


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
           protein C27F2.8 protein.
          Length = 1715

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 9/48 (18%), Positives = 28/48 (58%)

Query: 51  LSVTALGFTIYGNGEAKIRVIRPRIKATLLIHLNIREGMALNLQEADV 98
           +++  +   IY + E+ + ++RP + + L  H+ + E +  +L++ ++
Sbjct: 772 VAIQVIPLVIYPDAESLVELMRPNLVSELTDHVEMNETLMFSLRDTEL 819


>AY037797-1|AAK94762.1|  412|Caenorhabditis elegans GLY-18 protein.
          Length = 412

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 129 LVPELLEVFETEINEIVTDIFFEIAQDIIKDLDL 162
           LVP +LE   +  N   T I  +I  D++ DLD+
Sbjct: 1   LVPRILESLNSSRNPQETSILSKIENDLLDDLDI 34


>Z46996-1|CAA87099.1|  472|Caenorhabditis elegans Hypothetical
           protein C34C12.1 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 111 GIFNDPVLSEFVSRFLGNLVPELLEVFETEINEIVTDIFFEIAQDIIKDL 160
           GIFND   SE + ++LG +V +L  +   +I     DI   + Q +  D+
Sbjct: 327 GIFNDDESSENIRKYLGPIVEQLNRLLFLKIKVGDKDIDVPVEQYLGGDM 376


>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 111 GIFNDPVLSEFVSRFLGNLVPELLEVFETEINEIVTDIFFEIAQDIIKDL 160
           GIFND   SE + ++LG +V +L  +   +I     DI   + Q +  D+
Sbjct: 322 GIFNDDESSENIRKYLGPIVEQLNRLLFLKIKVGDKDIDVPVEQYLGGDM 371


>Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical
           protein M106.3b protein.
          Length = 365

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 113 FNDPV--LSEFVSRFLGNLVPELLEVFETEINEIVTD 147
           FND +   +E VS  LG+L PE ++++   +  +++D
Sbjct: 222 FNDTINYKTENVSERLGHLAPEGIDIYWDNVGGVISD 258


>Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical
           protein M106.3a protein.
          Length = 373

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 113 FNDPV--LSEFVSRFLGNLVPELLEVFETEINEIVTD 147
           FND +   +E VS  LG+L PE ++++   +  +++D
Sbjct: 230 FNDTINYKTENVSERLGHLAPEGIDIYWDNVGGVISD 266


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.145    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,387,799
Number of Sequences: 27539
Number of extensions: 122393
Number of successful extensions: 278
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 8
length of query: 167
length of database: 12,573,161
effective HSP length: 76
effective length of query: 91
effective length of database: 10,480,197
effective search space: 953697927
effective search space used: 953697927
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)