Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001761-TA|BGIBMGA001761-PA|undefined
(284 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980 33 0.35
10_02_0137 - 5730778-5730873,5732137-5732334,5732413-5732625,573... 31 0.80
07_01_0434 - 3302926-3303072,3303402-3303545,3303644-3304293,330... 31 1.1
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217... 31 1.1
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279... 29 3.2
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 29 4.3
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115... 29 4.3
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366... 29 5.6
03_05_0924 + 28861561-28861692,28861970-28862262,28862841-28863657 28 7.4
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689... 28 9.8
>05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980
Length = 681
Score = 32.7 bits (71), Expect = 0.35
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 2 SSSKVEADHKGSSTAKSRPPRTESDTHPHFSNWTTPGTDRPDVSPATDS---TNSKTGPE 58
S K A +GS K PPR+ P + P RPD +P D+ S+ GP
Sbjct: 408 SGDKKRAQPRGSGFRKDMPPRSHDGPAP--GRQSQPHFHRPDKAPVVDAIRPLGSQDGPM 465
Query: 59 DLEKELSPDAI 69
+L P +
Sbjct: 466 SAPTKLPPGPV 476
>10_02_0137 -
5730778-5730873,5732137-5732334,5732413-5732625,
5732748-5732870,5733726-5733841,5734530-5734897,
5735498-5735649,5736557-5736715,5737773-5737946
Length = 532
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 9 DHKGSSTAKSRPPRTESDTHPHFSNWTTPGTDRP-DVSPATDSTNSKTGP 57
D K S A S+ + ESDT P + TP + +P + A T++ P
Sbjct: 419 DSKASGGAASKKAKVESDTKPSVAKDETPSSSKPASKATAASKTSANVSP 468
>07_01_0434 -
3302926-3303072,3303402-3303545,3303644-3304293,
3304410-3304493,3304651-3304703,3305127-3305197,
3305285-3305362,3305775-3305903,3305988-3306044,
3306693-3306923,3307748-3307882,3308609-3308684,
3308768-3309024,3309095-3309202,3309328-3309526,
3309600-3309604
Length = 807
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 5 KVEADHKGSSTAKSRPPRTESDTHPHFSNWTTP--GTDRPDVSPATDSTNSKTGPEDLEK 62
K +D G+ + E+ + H ++ + P G + P++SP S D+
Sbjct: 557 KTASDMIGTMKPEELQKMFEAASSLHGTSSSPPNLGPNMPEMSPEMFKMAS-----DMIG 611
Query: 63 ELSPDAIANLLNKTKVSHNYSAADIYKNNKIQSS 96
+SPD + N+LN SA+ + NK+QSS
Sbjct: 612 NMSPDELQNMLNFASNMGGPSASPLRPENKLQSS 645
>01_05_0174 +
18919759-18920265,18920381-18920443,18921060-18921761,
18922934-18923068,18923391-18923474,18924095-18924151,
18924290-18924376,18924963-18925205
Length = 625
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 26 DTHPHFSNWTTPGTDRPDVSPAT-DSTNSKTGPEDLEKELSPDAIANLL-NKTKVSHNYS 83
DT P S + G D AT STN + ED EK SPD I +++ + + ++
Sbjct: 392 DTIPLTSK-ESAGASHADPGGATKSSTNGSSAKEDNEKSYSPDVIVSIMASLERSTYEAL 450
Query: 84 AADIYKNNK 92
+D K N+
Sbjct: 451 GSDFQKYNQ 459
>12_02_0712 +
22426945-22426981,22427517-22427623,22427707-22427955,
22429309-22429937,22430013-22430192,22430267-22430555,
22431183-22431247,22431379-22431471,22431811-22431897,
22431971-22432071,22432571-22432692
Length = 652
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/58 (25%), Positives = 23/58 (39%)
Query: 10 HKGSSTAKSRPPRTESDTHPHFSNWTTPGTDRPDVSPATDSTNSKTGPEDLEKELSPD 67
HKG ++ + H HF+ P +P +S +T K E +KE D
Sbjct: 170 HKGDKIKEATNVKVPVAVHDHFNRMARPLAPKPPISDFRRTTRKKRLKEFSKKEFEKD 227
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 35 TTPGTDRPDVSPATDSTNSKTGPEDLEKELSPDAIANL 72
+TP T P P T + N P++ + SP A +NL
Sbjct: 719 STPSTSFPSPVPTTSNNNMMPAPQNTNQLSSPTASSNL 756
>01_06_1097 +
34507376-34507395,34509380-34511214,34511263-34511598,
34511800-34513691
Length = 1360
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 13 SSTAKSRPPRTESDTHPHFSNWTTPGTDRPDVSPATDSTNSKTGPEDLEKELSPDA 68
SST P+ +SDT H S+ D D + TD+ ++K E+ KE +A
Sbjct: 382 SSTHPDTIPKDDSDTDSHVSSQDHQTDD--DSNDETDNNDAKENGEEKNKEQGKEA 435
>03_05_0325 +
23135816-23135894,23136161-23136333,23136440-23136613,
23136881-23137004,23137090-23137190,23137337-23137423,
23137801-23137896,23138209-23138329,23138475-23138603,
23139458-23139549,23139660-23139771,23140189-23140541,
23140670-23140899,23141179-23141278,23143357-23143411,
23143548-23145496,23145587-23145745,23146514-23146685,
23146758-23147056,23147246-23147521
Length = 1626
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 38 GTDRPDVSPATDSTNSKTGPEDLEKELSPDAIANLLNKTKVSHNYSAADIYKNNKI 93
G DRP S T TN+K G E ++KE I + +K N + KI
Sbjct: 9 GGDRPWESYHTAYTNAKAGMEGVDKEKVQKVIYEMSKGSKYFENEQRKEAITKQKI 64
>03_05_0924 + 28861561-28861692,28861970-28862262,28862841-28863657
Length = 413
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 15 TAKSRPPRTESDTHPHFSNWTTP 37
T SRP S +HP ++WT+P
Sbjct: 282 TTDSRPSPQTSTSHPEMASWTSP 304
>03_06_0358 +
33366265-33366447,33367371-33367468,33367910-33368945,
33369042-33369554,33370456-33370644,33370715-33370848,
33371196-33371358
Length = 771
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 118 VCFYLATTYKNAVQDIRKYFYIRYLYVNNKEYEIGYLTHEIIYKYQIVLELFQIIQKNTD 177
+C YL K + +++R+ Y Y EI L E++ ++ +I+ ++
Sbjct: 66 LCSYLQDLKKASSEEMRRSVYANYAAFIRTSKEISDLERELLSVRNLLSTQSALIRGLSE 125
Query: 178 IIHLCNMLHEIEKKYEHNTD 197
+H+ ++ E E TD
Sbjct: 126 GVHIDSLTTGSEGSAEEGTD 145
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,250,333
Number of Sequences: 37544
Number of extensions: 276646
Number of successful extensions: 740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 10
length of query: 284
length of database: 14,793,348
effective HSP length: 81
effective length of query: 203
effective length of database: 11,752,284
effective search space: 2385713652
effective search space used: 2385713652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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