GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001761-TA|BGIBMGA001761-PA|undefined
         (284 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical ...    33   0.30 
AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical ...    33   0.30 
AC024755-2|AAL65800.1|  498|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z75545-6|CAA99888.3|  649|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL008986-2|CAA15621.3|  649|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine re...    29   4.9  
Z82084-3|CAB04977.1|  780|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z92813-3|CAB07287.1|  621|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U28737-5|AAA68274.1|  684|Caenorhabditis elegans Na/h exchanger ...    28   8.6  
U28737-4|AAM48522.1|  749|Caenorhabditis elegans Na/h exchanger ...    28   8.6  
AF497827-1|AAM18105.1|  684|Caenorhabditis elegans putative Na-H...    28   8.6  
AF497826-1|AAM18104.1|  749|Caenorhabditis elegans putative Na-H...    28   8.6  

>AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical
          protein D1007.13a protein.
          Length = 142

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 13 SSTAKSRPPRTESDTH-PHFSNWTTPGTDRPDVSPATDSTNSKTGPEDL 60
          SSTA S PP T S T+     +   P T  P   P + S  S   PEDL
Sbjct: 22 SSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDL 70


>AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical
           protein D1007.13b protein.
          Length = 247

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 13  SSTAKSRPPRTESDTH-PHFSNWTTPGTDRPDVSPATDSTNSKTGPEDL 60
           SSTA S PP T S T+     +   P T  P   P + S  S   PEDL
Sbjct: 127 SSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDL 175


>AC024755-2|AAL65800.1|  498|Caenorhabditis elegans Hypothetical
           protein Y34B4A.10 protein.
          Length = 498

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 17  KSRPPRTESDTHPHFSNWTTPGTDRPDVSPATD----STNSKTGPEDLEKELSPDAIANL 72
           +S P   E+D+   F   +  G     V+P +     +T+  T PE      +P+ I+ +
Sbjct: 129 ESMPIIKETDSPSSFDEKSNIGLTSSSVAPTSPEVPVTTSESTTPEHAITSEAPEPISEV 188

Query: 73  LNKTKVSHNYSAADIY 88
              T + H+Y+   +Y
Sbjct: 189 SKATPLEHHYAEERVY 204


>Z75545-6|CAA99888.3|  649|Caenorhabditis elegans Hypothetical
           protein H37N21.1 protein.
          Length = 649

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 14  STAKSRPPRTESDTHPHFSNWTTPGTDRPDVSPATDSTNSKT-GPEDLEKELSPDAIANL 72
           +T  S P  T    +   +  T+  T  P  S     T + T GP  + K  SP+A+   
Sbjct: 408 TTDISAPSSTHPSANSTITAETSVNTSLPGQSSQPSGTTTNTNGPSSIGKSASPEAVDKK 467

Query: 73  LNKTKVSHNYSAADIYKN 90
           + +   + + S  ++  N
Sbjct: 468 IGEVTSTESTSKVEVEVN 485


>AL008986-2|CAA15621.3|  649|Caenorhabditis elegans Hypothetical
           protein H37N21.1 protein.
          Length = 649

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 14  STAKSRPPRTESDTHPHFSNWTTPGTDRPDVSPATDSTNSKT-GPEDLEKELSPDAIANL 72
           +T  S P  T    +   +  T+  T  P  S     T + T GP  + K  SP+A+   
Sbjct: 408 TTDISAPSSTHPSANSTITAETSVNTSLPGQSSQPSGTTTNTNGPSSIGKSASPEAVDKK 467

Query: 73  LNKTKVSHNYSAADIYKN 90
           + +   + + S  ++  N
Sbjct: 468 IGEVTSTESTSKVEVEVN 485


>AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine
           receptor, class sx protein13 protein.
          Length = 291

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 137 FYIRYLYVNNKEYEIGYLTHEIIYKYQIVLELFQIIQKNTDIIHLCN 183
           F ++Y+ + +++Y   +++  ++  Y   + LF  +  N D IH+CN
Sbjct: 109 FPLQYMNIASRKYL--FVSFMLVILYSSSVTLFGYLTTNDDTIHVCN 153


>Z82084-3|CAB04977.1|  780|Caenorhabditis elegans Hypothetical
          protein ZK1053.3 protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 13 SSTAKSRPPRTES----DTHPHFSNWTTPGTDRPDVSPATDSTNSKTGPEDLEKELSPDA 68
          S +    PP TE         +FSN  T        +PA  +  + T  +D    L+P  
Sbjct: 2  SDSNTPNPPGTEERLVQQLDSYFSNTATGNETGEASAPAAPNNAAGTSDQDRPPNLAPIL 61

Query: 69 IANLLNKTKVSHNYSAADIYKN 90
          + + LN      +++  DI K+
Sbjct: 62 MLSYLNHCMSKKSFTPEDIQKS 83


>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 20  PPRTESDTHPHFSNWTTPGTD-RPDVSPATDSTNSKTGPEDLEKELSPDAIA 70
           PP+ E+   P   N T+   D  P+  P   S+N KT  E  E+EL     A
Sbjct: 659 PPKNET-VDPVHENGTSGEKDGTPEAQPLKSSSNKKTQAEKDEEELKKRVFA 709


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 12   GSSTAKSRP-PRTESDTHPHFSNWTTPGTDRPDVSPATDSTNSKT 55
            GS+   S P P T  +T+P  S+ ++  T  P  S +T    S T
Sbjct: 960  GSTEGSSSPIPSTSQNTNPSTSSGSSMSTQTPQSSQSTSPVESST 1004


>Z92813-3|CAB07287.1|  621|Caenorhabditis elegans Hypothetical
           protein T28A8.3 protein.
          Length = 621

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 5   KVEADHKGSSTAKSRPPRTESDTHPHFSNWTTPGTDRPDVSPATDSTNSKTGPEDLEKEL 64
           K+E DH  S+  K +        H H SN   P   R     +    + K+  +D++  +
Sbjct: 247 KLEGDHSRSARNKRKYAAYRKTDHHHLSNAKDPKLSRKSGRKSDLEFSDKSDEDDVDSAI 306

Query: 65  S 65
           S
Sbjct: 307 S 307


>U28737-5|AAA68274.1|  684|Caenorhabditis elegans Na/h exchanger
           protein 4, isoform b protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 15  TAKSRPPRTESDTHPHFSNWTTPGTDRPDVSPATDSTNSKTGPEDLEKELSPDAIANLLN 74
           +A  RPP   S  + H +  + PG DR          NS +G +++E +     +   L+
Sbjct: 582 SASKRPPFDPSQVYQHQNTISNPGDDR--ARCYNRRHNSMSGADEMELKQLNQTVQKKLS 639

Query: 75  KTKVS 79
           +T  S
Sbjct: 640 RTITS 644


>U28737-4|AAM48522.1|  749|Caenorhabditis elegans Na/h exchanger
           protein 4, isoform a protein.
          Length = 749

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 15  TAKSRPPRTESDTHPHFSNWTTPGTDRPDVSPATDSTNSKTGPEDLEKELSPDAIANLLN 74
           +A  RPP   S  + H +  + PG DR          NS +G +++E +     +   L+
Sbjct: 647 SASKRPPFDPSQVYQHQNTISNPGDDR--ARCYNRRHNSMSGADEMELKQLNQTVQKKLS 704

Query: 75  KTKVS 79
           +T  S
Sbjct: 705 RTITS 709


>AF497827-1|AAM18105.1|  684|Caenorhabditis elegans putative Na-H
           exchanger isoform 4b protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 15  TAKSRPPRTESDTHPHFSNWTTPGTDRPDVSPATDSTNSKTGPEDLEKELSPDAIANLLN 74
           +A  RPP   S  + H +  + PG DR          NS +G +++E +     +   L+
Sbjct: 582 SASKRPPFDPSQVYQHQNTISNPGDDR--ARCYNRRHNSMSGADEMELKQLNQTVQKKLS 639

Query: 75  KTKVS 79
           +T  S
Sbjct: 640 RTITS 644


>AF497826-1|AAM18104.1|  749|Caenorhabditis elegans putative Na-H
           exchanger isoform 4a protein.
          Length = 749

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 15  TAKSRPPRTESDTHPHFSNWTTPGTDRPDVSPATDSTNSKTGPEDLEKELSPDAIANLLN 74
           +A  RPP   S  + H +  + PG DR          NS +G +++E +     +   L+
Sbjct: 647 SASKRPPFDPSQVYQHQNTISNPGDDR--ARCYNRRHNSMSGADEMELKQLNQTVQKKLS 704

Query: 75  KTKVS 79
           +T  S
Sbjct: 705 RTITS 709


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,718,248
Number of Sequences: 27539
Number of extensions: 282663
Number of successful extensions: 815
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 19
length of query: 284
length of database: 12,573,161
effective HSP length: 81
effective length of query: 203
effective length of database: 10,342,502
effective search space: 2099527906
effective search space used: 2099527906
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)