GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001760-TA|BGIBMGA001760-PA|undefined
         (112 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8NTX5 Cluster: Transcriptional regulators; n=1; Coryne...    33   1.5  
UniRef50_A4VDP2 Cluster: Cyclic nucleotide phosphodiesterase; n=...    32   2.0  
UniRef50_Q23R36 Cluster: Putative uncharacterized protein; n=1; ...    31   4.6  

>UniRef50_Q8NTX5 Cluster: Transcriptional regulators; n=1;
          Corynebacterium glutamicum|Rep: Transcriptional
          regulators - Corynebacterium glutamicum (Brevibacterium
          flavum)
          Length = 102

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 2  LEIYRIYSNVTLHMAVNFTIYDSLNAYHVLQSDYNEIKVEQNLFYEVLAKH 52
          LE  RI  N T+H  V   +  +LN+  V  +DY  ++ E  + Y +L+KH
Sbjct: 3  LEEARIALNDTIHSPVRLALMAALNS--VDSADYQSLREELGVSYSLLSKH 51


>UniRef50_A4VDP2 Cluster: Cyclic nucleotide phosphodiesterase; n=1;
           Tetrahymena thermophila SB210|Rep: Cyclic nucleotide
           phosphodiesterase - Tetrahymena thermophila SB210
          Length = 1074

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 12/32 (37%), Positives = 23/32 (71%)

Query: 20  TIYDSLNAYHVLQSDYNEIKVEQNLFYEVLAK 51
           TIY+   +Y++ + DY+   VE+NL Y+++A+
Sbjct: 514 TIYNFEKSYYIHKGDYSSEDVEENLQYQIIAQ 545


>UniRef50_Q23R36 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1240

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 7    IYSNVTLHMAVNFTIYDSLNAYHVLQSDYNEIKVEQNLFYEVLAKHEG 54
            I SN+      N  +Y+ LN  H   S Y E+ V+QNL   VL   EG
Sbjct: 1028 IQSNMLPDYLRNIEVYEKLNYIHCDSSRYAEL-VKQNLQENVLKNEEG 1074


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,346,327
Number of Sequences: 1657284
Number of extensions: 2204119
Number of successful extensions: 5425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5424
Number of HSP's gapped (non-prelim): 3
length of query: 112
length of database: 575,637,011
effective HSP length: 88
effective length of query: 24
effective length of database: 429,796,019
effective search space: 10315104456
effective search space used: 10315104456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)