GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001760-TA|BGIBMGA001760-PA|undefined
         (112 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   2.8  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    24   6.6  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    23   8.7  

>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 28  YHVLQSDYNEIKVEQNLFYEVLAKH 52
           YH L  + N +++  N   E+L KH
Sbjct: 305 YHYLWKNSNALRISSNDLLEILLKH 329


>SPBC29A3.11c |||mitochondrial carboxylic acid
          transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 10 NVTLHMAVNFTIYDSL 25
          + TL  +V+FT+YDSL
Sbjct: 79 SATLSRSVSFTVYDSL 94


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 21  IYDSLNAYHVLQSDYNEIKVEQNLFYEVL 49
           IYD+L   ++  ++  E+ +++N FY+ L
Sbjct: 872 IYDALAKIYIDSNNNPEVFLKENNFYDTL 900


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 392,360
Number of Sequences: 5004
Number of extensions: 9553
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 3
length of query: 112
length of database: 2,362,478
effective HSP length: 64
effective length of query: 48
effective length of database: 2,042,222
effective search space: 98026656
effective search space used: 98026656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)