GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001760-TA|BGIBMGA001760-PA|undefined
         (112 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13951| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.5  

>SB_13951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 21  IYDSLNAYHVLQSDYNEIKVEQNLFY 46
           I D LNA+ VLQ +  E K+E ++F+
Sbjct: 130 IQDILNAWAVLQKEKEEEKIEHSIFH 155



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 21  IYDSLNAYHVLQSDYNEIKVEQNLFY 46
           + D LNA+ VLQ +  E K+E ++F+
Sbjct: 368 VQDILNAWAVLQKEKKEEKIEHSIFH 393


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,303
Number of Sequences: 59808
Number of extensions: 57582
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 2
length of query: 112
length of database: 16,821,457
effective HSP length: 73
effective length of query: 39
effective length of database: 12,455,473
effective search space: 485763447
effective search space used: 485763447
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)