GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001760-TA|BGIBMGA001760-PA|undefined
         (112 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   1.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   1.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   3.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.6  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 8/32 (25%), Positives = 18/32 (56%)

Query: 18  NFTIYDSLNAYHVLQSDYNEIKVEQNLFYEVL 49
           N TI+++   Y+   ++YN     + L+Y ++
Sbjct: 86  NNTIHNNNYKYNYNNNNYNNNNYNKKLYYNII 117


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 8/32 (25%), Positives = 18/32 (56%)

Query: 18  NFTIYDSLNAYHVLQSDYNEIKVEQNLFYEVL 49
           N TI+++   Y+   ++YN     + L+Y ++
Sbjct: 86  NNTIHNNNYKYNYNNNNYNNNNYNKKLYYNII 117


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 30  VLQSDYNEIKVEQN 43
           V+ SDY + +VEQN
Sbjct: 603 VMVSDYKDDRVEQN 616


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl
          cyclase beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/31 (22%), Positives = 15/31 (48%)

Query: 21 IYDSLNAYHVLQSDYNEIKVEQNLFYEVLAK 51
          IYD    Y+++ +  N + +  N   E+  +
Sbjct: 42 IYDDEITYNIISAAVNRLNIPANEILELFGR 72


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl
          cyclase beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/31 (22%), Positives = 15/31 (48%)

Query: 21 IYDSLNAYHVLQSDYNEIKVEQNLFYEVLAK 51
          IYD    Y+++ +  N + +  N   E+  +
Sbjct: 42 IYDDEITYNIISAAVNRLNIPANEILELFGR 72


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,733
Number of Sequences: 429
Number of extensions: 631
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 112
length of database: 140,377
effective HSP length: 50
effective length of query: 62
effective length of database: 118,927
effective search space:  7373474
effective search space used:  7373474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)