Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001759-TA|BGIBMGA001759-PA|undefined
         (412 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   2.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.6  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 364 STKLLLRSNEDSAYLALRRQEEELKSKYREQYTMKM 399
           S  L+L   + S  L L   +E+LKSK  E+   K+
Sbjct: 349 SRDLMLAGTQQSVELKLALDQEQLKSKKLEESMRKL 384


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 224 LLKGEIDSWDAHDIMGVSDKHKVGKLSLELLQDSKLKLRQIRDIVDE 270
           +LKG  +  D   +   ++  ++  +S E+L+++K+   +IR ++DE
Sbjct: 411 ILKGPANP-DIFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDE 456



 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 80   VNMMHEIPIKYQYSPELLRDMRQADLD 106
            V++  E+  +YQ  P+ L ++ QAD++
Sbjct: 1003 VHVTPELIYEYQIHPKTLNEVLQADMN 1029


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 224 LLKGEIDSWDAHDIMGVSDKHKVGKLSLELLQDSKLKLRQIRDIVDE 270
           +LKG  +  D   +   ++  ++  +S E+L+++K+   +IR ++DE
Sbjct: 117 ILKGPANP-DIFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDE 162


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 296 TYRDARDRYTNRTLLAGPGVRVFKPLHYIISMEL-VHTKEVD 336
           T R A    T+R  L+    RVF+   YI  ++   HT E D
Sbjct: 294 TLRPAAGLLTSRDFLSSLAFRVFQSTQYIRHIKSPYHTPEPD 335


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,422
Number of Sequences: 429
Number of extensions: 5691
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 412
length of database: 140,377
effective HSP length: 59
effective length of query: 353
effective length of database: 115,066
effective search space: 40618298
effective search space used: 40618298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)