Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001759-TA|BGIBMGA001759-PA|undefined
         (412 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25160.1 68417.m03622 protein kinase family protein contains ...    31   1.1  
At4g27500.1 68417.m03950 expressed protein non-consensus GA dono...    31   1.9  
At2g34780.1 68415.m04270 expressed protein                             30   2.5  
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains...    29   4.3  
At4g35630.1 68417.m05060 phosphoserine aminotransferase, chlorop...    29   7.5  
At2g17630.1 68415.m02039 phosphoserine aminotransferase, putativ...    29   7.5  
At5g08570.1 68418.m01020 pyruvate kinase, putative similar to py...    28   9.9  

>At4g25160.1 68417.m03622 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 835

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 7/123 (5%)

Query: 38  IERYKKMVEHVKRPMEFKSDSVFDTLKRT-ELIQKLYFEAYHLVNMMHEIPIKYQYSPEL 96
           +E+ +  + HV+          FD  ++  EL Q+   EA  L     E+ +K +Y    
Sbjct: 353 VEKLRAELRHVQEMYAVAQTETFDASRKLGELNQRRLEEAIKL----EELKLK-EYEARE 407

Query: 97  LRDMRQADLDEVLK-REQWIEATERQRILQLKADRKRIKKMRQLALKMGTLYKPVLNKTY 155
           L +  + + ++  +  E   E  ER+   + +A+RK  +  ++     GTL  P L   +
Sbjct: 408 LAEKEKQNFEKARRDAESMRERAEREIAQRREAERKSARDTKEKEKLEGTLGSPQLQYQH 467

Query: 156 NKW 158
             W
Sbjct: 468 FAW 470


>At4g27500.1 68417.m03950 expressed protein non-consensus GA donor
           splice site at exon 6
          Length = 612

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 344 LESIPTKMMGSKDSVIVIKNSTKLLLRSNEDSAYLA---LRRQEEELKSKYREQYTM 397
           +  +  K+  +KD + V++N  K +     D AY     LRRQ +E  S+Y +  T+
Sbjct: 265 INELSEKLKATKDEITVLENELKTV-SEKRDKAYSNIHDLRRQRDETNSEYYQNRTV 320


>At2g34780.1 68415.m04270 expressed protein
          Length = 1297

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 24/115 (20%), Positives = 61/115 (53%), Gaps = 8/115 (6%)

Query: 39  ERYKKMVEHVKRPMEFKS--DSVFDTLKRTELIQKLYFEAYHLVNMMHEIPIKYQYSPEL 96
           E+ + +  + K  M++KS  D +   L+  +L+ +   +  H +++  +    +  SP+ 
Sbjct: 306 EKIRLLEMNKKTAMDWKSRTDDLTQQLQEAQLVAEGLKKQVHELSLSQKSIKTHSISPQK 365

Query: 97  LRDMRQADLDEVLKREQWIE---ATERQRILQLKADRK--RIKKMRQLALKMGTL 146
           +RD+ +A++  +LK++   E   A   Q + + +  R+  + +++ +L L+ G+L
Sbjct: 366 VRDLEKAEM-RLLKKKMKFERNCAKHSQTVAKFEKFRREFQCEELGRLKLEFGSL 419


>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 514

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 288 EKYKRMLETYRDARDRYTNRTLLAGPGVRVFKPLHYIISMELVHTKEVDIDKLVSVLESI 347
           E +K +   Y DA++   N          +F  +  ++ +E +     D+ + +     +
Sbjct: 399 EAFKVLANNYLDAKEEDDNE---------LFDEIKRLLEVEEIKMTPADVGENLLKKSEV 449

Query: 348 PTKMMGSKDSVIVIKNSTKLLLRSNEDSAYLALRRQEEELKSKYREQYTMK 398
            TK +  K  +  +K   +   R  ED      +++EEE+K K RE+  +K
Sbjct: 450 ETKEICLKRLIEALKEEKEEAKRRIEDEE--KKKKEEEEIKRKKREEKKIK 498


>At4g35630.1 68417.m05060 phosphoserine aminotransferase,
           chloroplast (PSAT) identical to Phosphoserine
           aminotransferase, chloroplast precursor (PSAT)
           (SP:Q96255)[Arabidopsis thaliana]; contains TIGRFAM
           TIGR01364: phosphoserine aminotransferase; contains Pfam
           PF00266: aminotransferase, class V
          Length = 430

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 223 LLLKGEID--SWDAHDIMGVSDKHKVGKLSLELLQDSKLKLRQIRDIVDEHSVV 274
           +LLK + D  +W    +  +   H+ GK  L ++Q ++  LRQ+ +I  E+SV+
Sbjct: 87  VLLKAQADLYNWRGSGMSVMEMSHR-GKEFLSIIQKAESDLRQLLEIPQEYSVL 139


>At2g17630.1 68415.m02039 phosphoserine aminotransferase, putative
           similar to Phosphoserine aminotransferase, chloroplast
           precursor (PSAT) (SP:Q96255) [Arabidopsis thaliana];
           contains TIGRFAM TIGR01364: phosphoserine
           aminotransferase; contains Pfam PF00266:
           aminotransferase, class V
          Length = 422

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 206 RIINAANEMRRKLITGLLLLKGEIDSWDAHDIMGVSDKHKVGKLSLELLQDSKLKLRQIR 265
           R+IN A          LL  + ++ +W    +  +   H+ GK  L ++Q ++  LRQ+ 
Sbjct: 62  RVINFAAGPAALPENVLLKAQSDLYNWRGSGMSVMEMSHR-GKEFLSIIQKAESDLRQLL 120

Query: 266 DIVDEHSVV 274
           +I  E+SV+
Sbjct: 121 EIPSEYSVL 129


>At5g08570.1 68418.m01020 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Glycine max]
           SWISS-PROT:Q42806
          Length = 510

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 187 KSLVYSEPNPISSIEVLRDRIINAANEMRRKLITGLLLLKG 227
           K ++ + P P+S +E L    +  AN+ R KLI  ++L +G
Sbjct: 366 KEMIRATPLPMSPLESLASSAVRTANKARAKLI--IVLTRG 404


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.137    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,335,162
Number of Sequences: 28952
Number of extensions: 397677
Number of successful extensions: 1141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1141
Number of HSP's gapped (non-prelim): 7
length of query: 412
length of database: 12,070,560
effective HSP length: 83
effective length of query: 329
effective length of database: 9,667,544
effective search space: 3180621976
effective search space used: 3180621976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)