GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001759-TA|BGIBMGA001759-PA|undefined
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    30   0.69 
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||...    29   1.2  
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ...    29   1.2  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    29   1.6  
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc...    29   1.6  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    28   2.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    28   2.8  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    27   3.7  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    27   4.8  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   6.4  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    27   6.4  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    27   6.4  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    26   8.5  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   8.5  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    26   8.5  

>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 249  LSLELLQDSKLKLRQIRDIVDEHSVVVAFQIGYILGQIREKYKRMLETYRDARDRYTN 306
            ++  +  +S+L L+ +R+ +   +  +   +  IL + R++YK +L+ Y   R RY N
Sbjct: 1025 MTSNVTDESQLMLKTLREALQSKTNNID-HLSTILERNRKEYKSLLDDYNQLRARYKN 1081


>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/46 (30%), Positives = 31/46 (67%), Gaps = 2/46 (4%)

Query: 98  RDMRQADLDEVL--KREQWIEATERQRILQLKADRKRIKKMRQLAL 141
           R +++A+L+E L  +REQ ++  E+Q  ++ +    R+++ R++AL
Sbjct: 99  RKVKRAELEEKLAKRREQELQELEKQEKIEAEILESRLQEQRKVAL 144


>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 55  KSDSVFDTLKRTELIQKLYFEAYHLVNMMHEIPIKYQYSPELL---RDMRQADLDEVLK 110
           + D     L+  +  Q++Y EAY  + ++ +  ++  Y  E++   R+M ++  DE+LK
Sbjct: 12  EKDITLRGLETVKKCQRIYLEAYTSILLVQKEKLEELYGKEVILADREMVESSSDEILK 70


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 22/122 (18%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 34   IGEIIERYKKMVEHVKRPMEFKSDSVFDT-LKRTELIQKLYFEAYHLVNMMHEIPIKYQY 92
            I +I+   K+ +E V++       +  DT +   E +++       ++ +   I  + Q 
Sbjct: 1465 IMDILNTTKEELEKVRQNSNKSEGTSKDTEIPNEEEMERKKVMQQEVLRLRSRIAKELQK 1524

Query: 93   SPELLRDMRQADLDEVLKREQWIEATERQRILQLKADRKRIKKMRQLALKMGTLYKPVLN 152
            + ELLR   Q   D+V   ++ + ++E      + AD K ++ +++    +   ++ + N
Sbjct: 1525 N-ELLRKQNQVLQDQVKALQETVVSSEEAESASVHADTKDLENLKKTEEMLSVTFQVIFN 1583

Query: 153  KT 154
            ++
Sbjct: 1584 ES 1585


>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 244 HKVGKLSLELLQDSKLKLRQIRDIVDEHSVVVAFQ 278
           H V    + +L+D  LK  Q+R +VDE S  +A++
Sbjct: 9   HPVVNEQIAILRDRSLKPSQVRSVVDEISRFLAYE 43


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 10/62 (16%)

Query: 245 KVGKLS--LELLQDSKLKLRQIRDIVDEHSVVVAFQIGYILGQIREKYKRMLETYRDARD 302
           +V KLS  + L+Q    K+ +I+  V++  ++V+  +GY L      Y+ ML+T   ARD
Sbjct: 97  EVNKLSDRITLIQG---KMEEIQLPVEKVDIIVSEWMGYFL-----LYESMLDTVLVARD 148

Query: 303 RY 304
           RY
Sbjct: 149 RY 150


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 355  KDSVIVIKNSTKLLLRSNEDSAYLALRRQEEELKSKYREQYTMKMLGLMGNESLTFAL 412
            KDS+I   +  K L+       ++ L+    +  S + ++ T+K+L +MG  S T +L
Sbjct: 1627 KDSIIY-DSDFKTLVSEEGSFQWVKLQPTNFDSLSNWTKEETLKLLNMMGKSSTTHSL 1683


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 108 VLKREQWIEATERQRILQLKADRKRIKKMRQLALKMGTLYKPVLNKTYNKW 158
           V+K  Q  +    + I + K D  +IKK+R   L + +L  P+L K Y+++
Sbjct: 46  VVKHRQTKQRFALKCINKKKHDEHKIKKLRNEVLLLQSLNHPLLCKFYSEF 96


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 260 KLRQIRDIVDE--HSVVVAFQIGYILGQIREKYKR--MLETYRDARDRYTNRTLLAGPGV 315
           KL  I  +V++  HSVV  F IG I   + E Y +  +    +D RD     T      V
Sbjct: 669 KLEAISTLVEKEFHSVVYHF-IG-IQRSLYENYAQGFLFLIPQDMRDSILEETQDYAELV 726

Query: 316 RVFKPLHY 323
           R F+P+HY
Sbjct: 727 RAFEPMHY 734


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 305 TNRTLLAGPGVRVFKPLHYIISMELVHTKEVDIDKLVSVLESIPTKMMGSKDSVIVIKNS 364
           T R +L  P    F+P   I   +  H  ++ ID+ + +LE   T+  G +DS++  K+ 
Sbjct: 9   TGRNILR-PDELAFQPREEI-PYKSFHP-DLQIDEPLEILEGDHTQYAGLRDSLVTYKSE 65

Query: 365 TKLLLRS 371
              +L++
Sbjct: 66  NSYVLKA 72


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 288 EKYKRMLE--TYRDARDRYTNRTLLAGPGVRVFKPLHYIISMELVHTKEVDIDKLVSVLE 345
           EK +RM+   + R    + +   ++A   VR+F PLH  I  +    + V+   L+    
Sbjct: 38  EKTRRMIHIISQRYKPKKQSPFPVIADENVRIFPPLHKTI--DWAKKRNVEEQNLIEQSI 95

Query: 346 SIPTKMMGSKDSVIVIKNSTKLLLRSNEDSAYLALRRQEEELKSKYREQ 394
           +   ++   K  +   + + +LL +   ++    L+ +EE  K +  E+
Sbjct: 96  TESQRIFSEKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEK 144


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 22  YEITPQYEMGYLIGEIIERYKKMVEHVKRPMEFKSDSVFDTLK 64
           Y+  P Y+ G ++ E +    K  +  K P+E K D     LK
Sbjct: 458 YKYNPDYKDGLVMQEYLPDSIKGTKFYKLPIELKEDEEIKNLK 500


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 72  LYFEAYHLVNMMHEIPIKYQYSPELLRDMRQADLDEVLKREQWI 115
           L+FE+Y  +N    IP    Y P +    + ++L +   R QW+
Sbjct: 196 LFFESYPELNPKRSIPCGKIYQPRIY-GFKVSELSKTGPRMQWL 238


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 9/59 (15%)

Query: 93  SPELLRDMRQADLDEVL---------KREQWIEATERQRILQLKADRKRIKKMRQLALK 142
           SPE L ++ + ++D ++         +RE+  +A E +R+ +L  + KR+KK  + A K
Sbjct: 686 SPEELEEIARRNVDPMVSELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARK 744


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 332 TKEVDIDKLVSVLESIPTKMMGSKDSVIVIKNSTKLLLRSNEDSAYLALRRQEE 385
           T E D+D+ ++  E    + +  K +V VI+N  +     +++ A  + ++QE+
Sbjct: 50  THETDLDEFLNTAELGEVEFIAEKQNVTVIQNPEQNPFLLSKEEAARSKQKQEK 103


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.137    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,369
Number of Sequences: 5004
Number of extensions: 79282
Number of successful extensions: 266
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 16
length of query: 412
length of database: 2,362,478
effective HSP length: 74
effective length of query: 338
effective length of database: 1,992,182
effective search space: 673357516
effective search space used: 673357516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)