Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001759-TA|BGIBMGA001759-PA|undefined
(412 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0869 - 23844378-23844689,23844924-23845233,23845322-238454... 35 0.14
05_03_0115 - 8544590-8544958,8545408-8545503,8561954-8562505,857... 30 2.9
01_06_1049 - 34114487-34114579,34115406-34115557,34115840-341164... 30 2.9
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 30 3.9
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 29 5.1
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 29 6.8
10_03_0003 + 6865111-6865223,6867322-6867796 29 9.0
>12_02_0869 -
23844378-23844689,23844924-23845233,23845322-23845447,
23845522-23845727,23845832-23845964,23846045-23846208,
23846856-23846948,23847074-23847196,23847318-23847384,
23847473-23847564,23847667-23847779,23847796-23847845,
23848098-23848189
Length = 626
Score = 34.7 bits (76), Expect = 0.14
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 183 GGHMKSLVYSEPNPISSIEVLRDRIINAANEMRRKLITGLLL-LKGEIDSW 232
GGHM + V+ P+S I V +R++ A NE + L+L LKGE + W
Sbjct: 43 GGHMAAAVHPGEQPLSRIAV--ERMVLAVNESAHVRASPLVLGLKGETNEW 91
>05_03_0115 -
8544590-8544958,8545408-8545503,8561954-8562505,
8576247-8576312,8576623-8576694,8576967-8577082,
8577743-8577838,8578498-8578765
Length = 544
Score = 30.3 bits (65), Expect = 2.9
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 233 DAHDIMGVSDKHKVGKLSLELLQDSKLKLRQIRDIVDEHSVVVAFQIGYILGQIREKYKR 292
D H + G D + +E LQD + Q + ++ + ++G +G++R+K +
Sbjct: 71 DRHALSGEVDHMRD---QIETLQDDLKQYEQPFSALSDYLGLSVLELGSAVGRLRDKEEH 127
Query: 293 MLETYRDAR 301
+++ YRD +
Sbjct: 128 LVKEYRDLK 136
>01_06_1049 -
34114487-34114579,34115406-34115557,34115840-34116418,
34117551-34117941,34118170-34118583
Length = 542
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 161 IDYGWEIDCHKSGPNPHGFLCVGGH 185
IDYG +++C + G PH + C H
Sbjct: 321 IDYGADVNCIREGIIPHKYFCKAAH 345
>09_06_0001 +
20114108-20115686,20115813-20115928,20116416-20117394,
20118820-20119082
Length = 978
Score = 29.9 bits (64), Expect = 3.9
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 8/167 (4%)
Query: 21 TYE-ITPQYEMGYLIGEIIERYKKMVEHVKRPME-FKSDSVFDTLKRTELIQKLYFEAYH 78
T+E I E ++ + + R K + +K+ ++ K S+ + KR QK E
Sbjct: 615 TFETIQDPEEKRRVLEKFLSRVKTDKDKLKKDIQKSKFLSIDEVFKRLNE-QKKKNEKPD 673
Query: 79 LVNMMHEIPIKYQYSPELLRDMRQADLDEVLKREQWIEATERQRILQLKADRKRIKKMRQ 138
L+++ + I Q E+ + + +L E E+ E + + + I+K +
Sbjct: 674 LISLFEDQKIMKQDLEEIRKRLYMLELKEGFHMEEKDEPIQEDDQVV-----ETIQKYMK 728
Query: 139 LALKMGTLYKPVLNKTYNKWWPIDYGWEIDCHKSGPNPHGFLCVGGH 185
+Y+ + + ID G +++C + G PH +LC H
Sbjct: 729 QKWYTEVMYRFIDRSYFQHITLIDSGADVNCIREGIIPHKYLCKAAH 775
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 29.5 bits (63), Expect = 5.1
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 36 EIIERYKKMVEHVKRPMEFKSDSVFDTLKRTELIQKLYFEAYHLVNMMHEIPIKYQYSPE 95
E +E KK +EH K ++ K D + L L +K EA + E K E
Sbjct: 259 EELEEAKKALEHTKATLKIKEDDINKRLAELHLQEK---EAESKNRKLEEREKKIAEREE 315
Query: 96 LLRDMRQADLDEVLK-REQWIEATERQRILQLKADRKRIKKM 136
+ + L ++L+ +E+ R LQL+ ++K M
Sbjct: 316 KVSAREKVGLQKLLEDHNVKLESKRRDFDLQLENEKKSFDAM 357
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 29.1 bits (62), Expect = 6.8
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 330 VHTKEVDIDKLVSVLESIPTKMMGSKDSVIVIKNSTKLLLR 370
VH +D+ +L+S E+ T + G+++ V++ +NS +L L+
Sbjct: 145 VHDMVLDLVRLLSAEENFVTVLDGNEELVLLSRNSRRLALQ 185
>10_03_0003 + 6865111-6865223,6867322-6867796
Length = 195
Score = 28.7 bits (61), Expect = 9.0
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 241 SDKHKVGKLSLELLQDSKLKLRQIRDIVDEHSVVVAFQIGYILGQIREKYKRMLETYRDA 300
S K L E+ K K+ + D ++EH+ ++A + +LG+ +++ + R
Sbjct: 98 SPSKKCIALQAEVEDKGKSKVNEANDDLEEHTALLARRFNDLLGRRKQRGRDSNSNRR-- 155
Query: 301 RDRYTNRTL 309
R+R N+TL
Sbjct: 156 RNRRPNKTL 164
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.137 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,978,709
Number of Sequences: 37544
Number of extensions: 451125
Number of successful extensions: 1117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 8
length of query: 412
length of database: 14,793,348
effective HSP length: 84
effective length of query: 328
effective length of database: 11,639,652
effective search space: 3817805856
effective search space used: 3817805856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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