GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001759-TA|BGIBMGA001759-PA|undefined
         (412 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.98 
SB_25382| Best HMM Match : DUF564 (HMM E-Value=3.5)                    31   2.3  
SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)                29   5.2  
SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 29   6.9  
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   9.1  

>SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 31.9 bits (69), Expect = 0.98
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 94  PELLRDMRQADLDEVLKREQWIEATERQRILQL-KADRKRIKKMRQLALKMGTLYKPVLN 152
           P   +  +  +L   L+REQ +   ER+R+L+  +A R++ K++  L ++M    K  L 
Sbjct: 310 PSAYQQKKILELGSTLRREQMLAGQERERMLRAEEAARQKDKELSDLMVRMVQYEKVRLR 369

Query: 153 KTYNK 157
           ++ N+
Sbjct: 370 RSDNQ 374


>SB_25382| Best HMM Match : DUF564 (HMM E-Value=3.5)
          Length = 167

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 75  EAYHLVNMMHEIPIKYQYSPELLRDMRQADLDE--VLKREQWIEATERQRILQLKADRKR 132
           E+Y++V + H+I     Y  ++    R+  +     L R+ W     R  +L    D   
Sbjct: 4   ESYNIV-IRHKIHAALSYDAKMEDRTRRIQMTRKAFLVRDIWSNRKRRMNLLHAVIDW-- 60

Query: 133 IKKMRQLALKMGTLYKPVLNKTYN 156
           I K RQL L++  L   +LN T+N
Sbjct: 61  ITKRRQLLLRLLFLSSLILNATHN 84


>SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 176 PHGFLCVGGHMKSLVYSEPNPISSIEVLRDRIINAANEMRRKLITGLLLLKGEIDSWDAH 235
           P GF C+   + + +Y  P+  +  + LR+ +  +   +  K     +LL G+ +  DA 
Sbjct: 155 PRGFHCI---IAAAIYHPPS--ADDQSLREHLFQSLALVESKFPNSGILLTGDFNRLDAF 209

Query: 236 DIMGVSDKHKVGKLSLELLQDSKLK 260
              G+SD + V   +++  Q++  K
Sbjct: 210 PPFGLSDHNTVLAAAIDKKQNNNRK 234


>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
          Length = 651

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 372 NEDSAYLALRRQEEELKSKYREQY 395
           NED  YL +R +E E +  +REQY
Sbjct: 260 NEDPRYLEIRAEELEARRAHREQY 283


>SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 97  LRDMRQADLDEVLKREQWIEATERQRILQLKADRKRIKKMRQLALKMGTLYKPV 150
           LR+   +   E+ K+EQ + A   +R     ++RKR++K+  L L+  +L + V
Sbjct: 403 LRETANSATQELKKKEQLLRALATERQSSGDSERKRLEKLECLLLENDSLRRHV 456


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 248 KLSLELLQDSKLKLRQIRDIVDEHSVVVAFQIGYILGQIREKYKRMLETYRDARDRYTNR 307
           K SL+ L + +L++RQ+  I +E + +    +  +   +R   +R LET     D+Y   
Sbjct: 649 KTSLDKLNERELEIRQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLET----TDKYETA 704

Query: 308 TL 309
           TL
Sbjct: 705 TL 706


>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 170  HKSGPNPHGFLCVGGHMKSLVYSEP--NPISSIEVLRDRIINAANEMRRKLI 219
            HK    PHG L     +    YS P    +  + +LRD++   A+++ R L+
Sbjct: 1794 HKLDQLPHGGLYTAAFLSHSFYSNPELEQVCVVTLLRDKVTQDAHDILRYLL 1845


>SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1400

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 332 TKEVDIDKLVSVLESIPTKMMGSKDSVIVIKNSTKLLLRSNEDS--AYLALRRQEEELKS 389
           T E D +KL   L  + ++   ++  +  ++   + LL+  E+S   YL L ++   LK+
Sbjct: 843 TTESDSEKLEKALAEMASRARSAESDLAFVEAENQDLLKQLEESKGMYLLLEKRYHLLKN 902

Query: 390 KYRE 393
           K +E
Sbjct: 903 KVKE 906


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.137    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,000,309
Number of Sequences: 59808
Number of extensions: 531045
Number of successful extensions: 1643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1640
Number of HSP's gapped (non-prelim): 9
length of query: 412
length of database: 16,821,457
effective HSP length: 84
effective length of query: 328
effective length of database: 11,797,585
effective search space: 3869607880
effective search space used: 3869607880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)