Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001758-TA|BGIBMGA001758-PA|undefined
         (171 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    23   1.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   1.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   2.4  

>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 122 INESKYEGVLNLSVKDGRRGHGRKQTAPRRIV 153
           I  SKY  +LN+++K+ R     K   P +I+
Sbjct: 18  IVNSKYNSILNIALKNFRLCKKHKTKKPVQIL 49


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 122 INESKYEGVLNLSVKDGRRGHGRKQTAPRRIV 153
           I  SKY  +LN+++K+ R     K   P +I+
Sbjct: 18  IVNSKYNSILNIALKNFRLCKKHKTKKPVQIL 49


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 145 KQTAPRRIVYCDSEDNVLD 163
           K   PR + + DSE N+L+
Sbjct: 188 KAARPRSLQFVDSEGNILE 206


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,324
Number of Sequences: 317
Number of extensions: 1081
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 171
length of database: 114,650
effective HSP length: 53
effective length of query: 118
effective length of database: 97,849
effective search space: 11546182
effective search space used: 11546182
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)