Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001758-TA|BGIBMGA001758-PA|undefined
         (171 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily ass...    27   7.1  
AF045646-10|AAU05566.1|  548|Caenorhabditis elegans Skp1 related...    27   9.3  
AF045646-9|AAL32223.1|  660|Caenorhabditis elegans Skp1 related ...    27   9.3  

>U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 52 protein.
          Length = 665

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 132 NLSVKDGRR-GHGRKQTAPRRIVY-CDSEDNVLDLKIKTEKP 171
           +L+V D R+  + ++   P  +V   D ED+++D+K+K E+P
Sbjct: 593 HLAVDDIRKLSYQQRSLEPFNMVTEDDDEDDIIDIKVKGERP 634


>AF045646-10|AAU05566.1|  548|Caenorhabditis elegans Skp1 related
          (ubiquitin ligasecomplex component) protein 18, isoform
          b protein.
          Length = 548

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 3  VEEVVELPTCKYADRVHSLKLSEDDLAFLKGLRRRIKNRALSERSD 48
          VEEV  LP+    D+    ++  D+     G+   +K R  +ERS+
Sbjct: 44 VEEVASLPSKVVRDQAARFQIDFDEEQAASGVLFPVKERNFAERSE 89


>AF045646-9|AAL32223.1|  660|Caenorhabditis elegans Skp1 related
          (ubiquitin ligasecomplex component) protein 18, isoform
          a protein.
          Length = 660

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 3  VEEVVELPTCKYADRVHSLKLSEDDLAFLKGLRRRIKNRALSERSD 48
          VEEV  LP+    D+    ++  D+     G+   +K R  +ERS+
Sbjct: 44 VEEVASLPSKVVRDQAARFQIDFDEEQAASGVLFPVKERNFAERSE 89


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,582,530
Number of Sequences: 27539
Number of extensions: 117002
Number of successful extensions: 285
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 3
length of query: 171
length of database: 12,573,161
effective HSP length: 77
effective length of query: 94
effective length of database: 10,452,658
effective search space: 982549852
effective search space used: 982549852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)