GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001758-TA|BGIBMGA001758-PA|undefined
         (171 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.65 
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   1.1  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    26   2.6  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   8.0  

>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 28.3 bits (60), Expect = 0.65
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 24  SEDDLAFLKGLRRRIKNRALSERSDSSAIPSIQNPAQNPHE 64
           S D+      +   +K    ++ +DS +IP +++P QNP E
Sbjct: 436 SPDEKLSRTDIDTHVKQLQTTKSTDSLSIPFVESPQQNPEE 476


>SPCC576.15c |ksg1||serine/threonine protein kinase
          Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 24 SEDDLAFLKGLRRRIKNRALSERSDSSAIPSIQNPAQNPHESPAK 68
          SE DL+F  G   ++ NRA   ++ +SAIP        P+ES ++
Sbjct: 22 SESDLSFDHGSSEKL-NRASLPKTQNSAIPQSNALNTTPNESTSQ 65


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 125 SKYEGVLNLSVKDGRRGHGRKQTAPRRIVYCDS 157
           +K + +  L   DG++  G  Q+ P++ VYC+S
Sbjct: 418 TKLDNLSCLHSFDGKQNFGLVQSFPKKEVYCES 450


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity
          protein kinase Mph1 |Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 10 PTCKYADRVHSLKLSEDDLAFLKGLR---RRIKNRALSERSDSS 50
          P    AD V    L ED L+FL+ L+      KN   S +S  S
Sbjct: 7  PVTNIADLVSDSSLDEDSLSFLEELQDPELYFKNDTFSSKSSHS 50


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,095
Number of Sequences: 5004
Number of extensions: 21243
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 4
length of query: 171
length of database: 2,362,478
effective HSP length: 68
effective length of query: 103
effective length of database: 2,022,206
effective search space: 208287218
effective search space used: 208287218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)