GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001757-TA|BGIBMGA001757-PA|undefined
         (303 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   0.36 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    25   0.63 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.5  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   7.7  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 5/58 (8%)

Query: 5   NNTKTEKSNESGDTKKIIDKYNRDDAVQTKYLPDRGDSSDKREKSRILDLAERKRIRE 62
           N ++  +++  G T+    K+N      T+Y+P+   SS+ +EK++I DL E   IR+
Sbjct: 370 NESENRRNSCLGSTETYYSKHNTQQF--TQYIPE--SSSNLQEKTKI-DLLEIPPIRK 422


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 8   KTEKSNESGDTKKIIDKYNRDDAVQTKYLPDRGDSSDKREKSRILDL 54
           K++ S E G+ KK  +K + DD    +  P +  ++DK+  +  LD+
Sbjct: 202 KSKASEEHGNKKKK-NKEDEDDGATPRKAPPQLSTTDKKGSAIDLDI 247


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 135 DNDRTRIYKVVRFINRKPQKGSIQIDLTSRAKKTSKYTETERREAK 180
           DNDR+RI ++ R    K ++ S ++      ++T    +T+    K
Sbjct: 22  DNDRSRIARLGRDDGGKSRQSSFEVTSLLMREETEDAEDTQTLNLK 67


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 6   NTKTEKSNESGDTKKIIDKYNRDDAVQTKYLPDRGDSSDKRE--KSRILDLAERKRIRER 63
           + + EK  E   ++K   +Y+R    + K   +       RE  K R  D  ER+R +ER
Sbjct: 256 HNEKEKLLEERTSRK---RYSRSREREQKSYKNENSYRKYRETSKERSRDRTERERSKER 312

Query: 64  YTIRLKAADQNVNTS 78
             I   + + N N +
Sbjct: 313 KIISSLSNNYNYNNN 327


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 182 PPEIASGVDKKPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVAKWAPTC 233
           PP   +    +P  +N G   +   K++ S  SL     +    V   + TC
Sbjct: 529 PPAKGAAAAGQPSKRNGGETNKQELKRLKSTVSLLPLPLARTPSVMSASSTC 580


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 153 QKGSIQIDLTSRAKKTSKYTETE 175
           ++GS+ + +TS+     + T+TE
Sbjct: 398 ERGSMTVSVTSKPSTMERQTQTE 420


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.127    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,841
Number of Sequences: 429
Number of extensions: 4170
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 303
length of database: 140,377
effective HSP length: 57
effective length of query: 246
effective length of database: 115,924
effective search space: 28517304
effective search space used: 28517304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)