Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001756-TA|BGIBMGA001756-PA|undefined
         (202 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.0  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              22   3.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.6  

>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 120 RKQNIMEALTNYRDKETSLRHFEMILQ 146
           R  N++E L NY DKE ++  F  +L+
Sbjct: 60  RTFNLVENLDNYNDKE-AVNEFMQLLK 85



 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 121 KQNIMEALTNYRDKETSLRHFEMIL 145
           K N+ E   NY  ++  L HF  +L
Sbjct: 211 KHNVPEQRLNYFTEDVGLNHFYFML 235


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 69  QVKTEEIIKEYGDVAAIKLLEKVTVKCVAQT----HAVKKLITTPDRALDAEMLTRKQNI 124
           Q+ +E +IK++          +V ++ +A+     + V KLIT      DA++  +   +
Sbjct: 60  QLFSECLIKKFNGYDDGGNFNEVVIREIAEIFLDENGVNKLITECSAISDADLAVKSAKL 119

Query: 125 MEALTNYR 132
           ++ +  Y+
Sbjct: 120 LKCIGKYK 127


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
          factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/31 (22%), Positives = 20/31 (64%)

Query: 6  TLKEVSQNFEQELKQLSNVLFSAKIGETFED 36
          T+KE++ + ++++  + NVL+     + +E+
Sbjct: 63 TVKELANSAKRDINDVLNVLYFINKNDKYEE 93


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.129    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,371
Number of Sequences: 429
Number of extensions: 1431
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 202
length of database: 140,377
effective HSP length: 55
effective length of query: 147
effective length of database: 116,782
effective search space: 17166954
effective search space used: 17166954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)