GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001756-TA|BGIBMGA001756-PA|undefined
         (202 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    31   0.024
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    24   3.7  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   4.8  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   8.4  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   8.4  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 31.1 bits (67), Expect = 0.024
 Identities = 17/73 (23%), Positives = 34/73 (46%)

Query: 113 LDAEMLTRKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKAA 172
           L  +++  KQ   EA T  +  E  L+H + +L++KQ   N   A + +   +L  ++  
Sbjct: 398 LQDQLIAAKQKSAEATTAIKQSEMELKHSQQLLRDKQKNMNSSDAAYLEDKRKLTKVEGQ 457

Query: 173 VSDDEEMDTNSAY 185
           +   E    ++ Y
Sbjct: 458 IGQLERELQSTGY 470


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 103 KKLITTPDRALDAEMLTRKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKS 162
           KK  T  +     EML  +QN+ E        +  L     +++EK  E    R +  + 
Sbjct: 24  KKSATGTNLPSSPEMLILRQNLEETRKKNESLQEQLTQLRWLMEEKLREQ---REDAQRR 80

Query: 163 LGELRDMKAAVSDDEE 178
             E R  + A   D E
Sbjct: 81  EEEARRREEAAKADNE 96


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 5   KTLKEVSQNFEQELKQLSNVLFSAKIGET 33
           K L++     EQ+L+QL+ V+F  +  ET
Sbjct: 754 KKLQQELLTNEQQLQQLAGVVFEGETEET 782


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 92   TVKCVAQTHAVKKLITTPDRALDA-EMLTRKQNIMEALTNYRDKETSLRHFEMILQEKQY 150
            T+  +A   A+      P   LD  +      NI +  +  R+K T+L+   + L+E+ Y
Sbjct: 1134 TIAALALLFAIHSFQPAPFFVLDEIDAALDNTNIGKVASYIREKTTNLQTIVISLKEEFY 1193

Query: 151  EH 152
             H
Sbjct: 1194 CH 1195


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 1/100 (1%)

Query: 84   AIKLLEKVTVKCVAQTHAVKKLITTPDRALDAEMLTRKQNIMEALTNYRDKETSLRHFEM 143
            A KL E +  +  A  +  + L    D+ L+  +      + E     R         + 
Sbjct: 1451 ASKLAENIKKRANATKNTARDLHHEADQ-LNGRLAKTDNRLEEREAQIRKDLNLTNEAKE 1509

Query: 144  ILQEKQYEHNLLRAEWDKSLGELRDMKAAVSDDEEMDTNS 183
             + + Q   N  +++ DK++ E+  + + +++  E+D NS
Sbjct: 1510 KVGQAQLNSNEAKSQVDKAMREVSLIMSELANLREIDVNS 1549


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.129    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,587
Number of Sequences: 2123
Number of extensions: 5168
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 202
length of database: 516,269
effective HSP length: 61
effective length of query: 141
effective length of database: 386,766
effective search space: 54534006
effective search space used: 54534006
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)