GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001755-TA|BGIBMGA001755-PA|IPR007123|Gelsolin region,
IPR007122|Gelsolin
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    31   0.19 
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    27   3.0  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    27   4.0  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    27   4.0  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   4.0  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   5.3  
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    26   9.3  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    26   9.3  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   9.3  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   9.3  

>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 179 DVFVLDLDNDIYVFVGEKAKNVEKLKAIS--FANQVRDQDHHGRGRVDIVDKYSSDVDVQ 236
           D   L+L+N ++  +   +  ++K         N+  +       + D ++K   D ++ 
Sbjct: 4   DTEELELENAVFGNINNFSSFLDKENETFDVMMNEAPELSEDNDAQEDELEKLE-DAELF 62

Query: 237 KFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDA 278
            F T    G KD VP +   GD+   E  EASN I S   D+
Sbjct: 63  MFDTGSADGAKDSVPLDIIAGDNTVKEDEEASNEIPSIWEDS 104


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 34  LSDKNARDKAKVHPAFANVGRTAGVQIWRIQTTSDNR 70
           L + N+R   K+H   AN G+ +    W + TT + R
Sbjct: 201 LGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 22  TKPQEISGPITSLSDKNARDKAKVHPAFANVGRTAGVQIWRIQTTSDNRNN-LSWDIHYW 80
           ++P   S P+ S    N    ++  PA  N    +G+   +    S NR N L     + 
Sbjct: 273 SQPSPYSRPLLSSVHPNLPPGSQSTPANLN---QSGIHFEQDFRDSPNRTNGLEDHTSFK 329

Query: 81  IGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSY 125
           +    T DE GA+++L    +D      ++ R+ +  +S    +Y
Sbjct: 330 LSSPLTSDEDGASSVLAAYGNDMQDDPLLKQRKRILSQSKFLFAY 374


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 251 PDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLSKPFKQ 293
           P+E    D++E ++ E+ +  L E+S +   ++  P    FK+
Sbjct: 34  PEEQEKKDEKEDDKEESPSKSLEEISQSVSPVEEEPRDVRFKE 76


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 282 IKVTPLSKPFKQENLSPQEKSQAMTKAQELLNAKNYPS-WVQVTRVLQNT--EPAAFKQY 338
           I  T L+K F++ +    + S  + K ++   +K+    W +  + L+N   EPA+ ++Y
Sbjct: 162 IDETELAKKFEEAS----QISNKLEKEKDATGSKSIEELWEEHQKQLKNAGLEPASLEEY 217

Query: 339 FFTWRDFGMSHS 350
              W DF  S++
Sbjct: 218 QKQWEDFLKSNN 229


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 283 KVTPLSKPFKQENLSPQEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEPAAFKQYFFTW 342
           KV P    FK EN S       +     LL  K  P+    T V++NT  +  K +  +W
Sbjct: 44  KVEP-KNAFKVENQSNDIGVDTVDAFDHLLLDKTLPTIDAETEVIKNTSLSNSKSFLHSW 102

Query: 343 R 343
           +
Sbjct: 103 Q 103


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 162 DVRVRQVDPQIASMNKGDVFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHH 218
           D R+ QV+    ++ +G   +    N+  V +G + KNV KL+ +S   ++   D+H
Sbjct: 14  DGRLLQVEYGQEAVRRGTTAIALRGNECIV-IGVERKNVPKLQNVSNFQKIAMVDNH 69


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 187 NDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGRVDIVDKYSSDVDVQKFFTALGSGV 246
           +D Y    EK K ++ L A+SF      +  +  G   I +    +++++ F      G+
Sbjct: 202 HDNYTRNIEKLKELDNLVAVSFERDDIVEPPYSTGFGWINETTGENIEMEDFVLYESLGL 261

Query: 247 KDLV 250
           KDLV
Sbjct: 262 KDLV 265


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 277 DATGKIK--VTPLSKPFKQENLSPQEKSQAMTKAQELL 312
           +ATG +K  +TP+    KQ +   QE+S    K+ +LL
Sbjct: 131 EATGLMKEDITPVVNTSKQSSTGTQEESSKPEKSNKLL 168


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 269 NVILSEVSDATGKIKVTPLSKPFKQENLSPQEKSQAMTKAQELLNAKNYPSWVQVTRVLQ 328
           +VILS    +T  + V P  +P   ++   QEK    +   ++++ ++ P++ ++ R L+
Sbjct: 620 DVILSFAHAST--VAVIPYVRPNIVDSSIAQEKHGQSSNILDIVSLEDTPNFEEIRRTLE 677

Query: 329 NTEPA 333
           N   A
Sbjct: 678 NNHCA 682


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,640,598
Number of Sequences: 5004
Number of extensions: 68773
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 10
length of query: 353
length of database: 2,362,478
effective HSP length: 73
effective length of query: 280
effective length of database: 1,997,186
effective search space: 559212080
effective search space used: 559212080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)