GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001755-TA|BGIBMGA001755-PA|IPR007123|Gelsolin region,
IPR007122|Gelsolin
         (353 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70755-3|CAA94782.1|  475|Caenorhabditis elegans Hypothetical pr...   181   8e-46
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    67   2e-11
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    67   2e-11
AL023844-7|CAA19532.1|  551|Caenorhabditis elegans Hypothetical ...    31   1.6  
AL132948-44|CAD31830.2|  410|Caenorhabditis elegans Hypothetical...    30   2.2  
U88311-8|AAB42341.2|  918|Caenorhabditis elegans Hypothetical pr...    30   2.9  
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w...    30   2.9  
Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    29   6.6  
AL031630-14|CAA20993.1|  185|Caenorhabditis elegans Hypothetical...    29   6.6  

>Z70755-3|CAA94782.1|  475|Caenorhabditis elegans Hypothetical
           protein K06A4.3 protein.
          Length = 475

 Score =  181 bits (440), Expect = 8e-46
 Identities = 104/296 (35%), Positives = 158/296 (53%), Gaps = 28/296 (9%)

Query: 75  WDIHYWIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLNYLE 134
           WD+H+W+G+ ++ DE G AAI TV +DD  GG   QHRE   +ES LFLSYF   + Y+ 
Sbjct: 57  WDVHFWLGKNASTDEIGVAAIKTVEIDDSLGGIPTQHREIQNYESPLFLSYFPDGIRYVS 116

Query: 135 GGNPSGFNHVVTNAGAQK-RMFQVKGKRDVRVRQVDPQIASMNKGDVFVLDLDNDIYVFV 193
           GG  SG+ HV       K  +F  KGKR+VR  +V+ ++ S+N GDVF+LDL  D+YV++
Sbjct: 117 GGYESGYRHVDDQFKNWKPHLFHCKGKRNVRCTEVECEVNSLNLGDVFILDLGKDLYVWM 176

Query: 194 GEKAKNVEKLKAISFANQVRDQDHHGRGRVDIVDKYSSDVDVQKFFTALGSGVKDLVPDE 253
             ++  +E++K ++ A  + D +  G  +V I+D    D D   F++  G GV  +    
Sbjct: 177 PPESGRLERIKGMARAKNIADHERMGIPKVHILDDVEWDND-STFWSYFG-GVSSVRKVS 234

Query: 254 STGGDDQEFERNEASNVILSEVSDATGKIKVTPLS--KPFKQENLSP------------- 298
               DD  + +     + L +VSDA+G  KV+ +S  +  ++E L P             
Sbjct: 235 KGKDDDDNYWKRLTEQITLWKVSDASGAAKVSMVSQGENIRKEQLDPKDAFILDAINGGI 294

Query: 299 ----------QEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEPAAFKQYFFTWRD 344
                     +E+S+A+   Q  L   + P W QVTRVL++ E   F Q+F  W D
Sbjct: 295 FVWIGHECTLEERSKALIWGQNYLKQHHLPRWTQVTRVLESAESTQFTQWFRDWVD 350



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 15/208 (7%)

Query: 145 VTNAGAQKRMFQVKGKRDVRVRQVDPQIASMNKGDVFVLD-LDNDIYVFVGEKAKNVEKL 203
           V++A    ++  V    ++R  Q+DP+       D F+LD ++  I+V++G +    E+ 
Sbjct: 256 VSDASGAAKVSMVSQGENIRKEQLDPK-------DAFILDAINGGIFVWIGHECTLEERS 308

Query: 204 KAISFANQVRDQDHHGRGR--VDIVDKYSSDVDVQKFFTALGSGVKD-LVPDESTGGDDQ 260
           KA+ +      Q H  R      +++   S    Q F   +    K+   P      D+ 
Sbjct: 309 KALIWGQNYLKQHHLPRWTQVTRVLESAESTQFTQWFRDWVDEKKKNTFTPLLFQVSDES 368

Query: 261 EFERNEASNVILSEVSDATGKIKVTPLSKPFKQ--ENLSPQEKSQAMTKAQELLNAKNYP 318
                E       E  D    + +  L+  +     N +  EK +A+  A+  L     P
Sbjct: 369 GLLHVEEIANFTQEDLDGDDVMILDALNSIYVWVGANANANEKKEALNTAKLYLEKDKLP 428

Query: 319 SWVQ--VTRVLQNTEPAAFKQYFFTWRD 344
              +  +  + Q  EP  FK++F +W D
Sbjct: 429 RHKKTAIDTIFQGKEPPTFKKFFPSWDD 456


>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 67.3 bits (157), Expect = 2e-11
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 5/165 (3%)

Query: 63  IQTTSDNRNNLSWDIHYWIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALF 122
           ++TT +    L   I YW+G  ++ D+   +A+  VGL +         RE M  E+  F
Sbjct: 540 LKTTREASGQLRHAIFYWLGEHASLDKGMCSAVHAVGLRNHLNATCRTQREEMNDETEEF 599

Query: 123 LSYFQTPLNYLEGGNP-SGFNHVVTNAGAQKRMFQ--VKGKRDVRVRQVDPQIASMNKGD 179
           L+ F   + Y+EGG   SGF +         R+++  V G   V +  V   + S++   
Sbjct: 600 LTLFGEEIVYIEGGRTISGF-YTTEKPAHLTRLYRAGVNGTA-VEMEPVPLSVESLDPRF 657

Query: 180 VFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGRVD 224
            F+LD    I+++ G K++     KA  FA ++  +D  G+  ++
Sbjct: 658 CFLLDAGETIWIWSGYKSRITVSNKARLFAERLNKRDRKGKSEIE 702



 Score = 31.5 bits (68), Expect = 0.93
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 176 NKGDVFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGRVDIVDKY-SSDVD 234
           +KG VFVLD ++DI++++G+KA  + K+       ++    H    R D    Y  ++ +
Sbjct: 772 SKG-VFVLDSNSDIFLWIGKKANRLLKMAGQKLVVEL----HQMIDRPDYAQVYRETEGE 826

Query: 235 VQKFFTALGSGVKDLVPDESTGGDD 259
               F +  +G  ++VP + T   D
Sbjct: 827 ESMMFRSKFAGWDEIVPVDYTRTSD 851


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 67.3 bits (157), Expect = 2e-11
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 5/165 (3%)

Query: 63  IQTTSDNRNNLSWDIHYWIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALF 122
           ++TT +    L   I YW+G  ++ D+   +A+  VGL +         RE M  E+  F
Sbjct: 540 LKTTREASGQLRHAIFYWLGEHASLDKGMCSAVHAVGLRNHLNATCRTQREEMNDETEEF 599

Query: 123 LSYFQTPLNYLEGGNP-SGFNHVVTNAGAQKRMFQ--VKGKRDVRVRQVDPQIASMNKGD 179
           L+ F   + Y+EGG   SGF +         R+++  V G   V +  V   + S++   
Sbjct: 600 LTLFGEEIVYIEGGRTISGF-YTTEKPAHLTRLYRAGVNGTA-VEMEPVPLSVESLDPRF 657

Query: 180 VFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGRVD 224
            F+LD    I+++ G K++     KA  FA ++  +D  G+  ++
Sbjct: 658 CFLLDAGETIWIWSGYKSRITVSNKARLFAERLNKRDRKGKSEIE 702



 Score = 31.5 bits (68), Expect = 0.93
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 176 NKGDVFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGRVDIVDKY-SSDVD 234
           +KG VFVLD ++DI++++G+KA  + K+       ++    H    R D    Y  ++ +
Sbjct: 772 SKG-VFVLDSNSDIFLWIGKKANRLLKMAGQKLVVEL----HQMIDRPDYAQVYRETEGE 826

Query: 235 VQKFFTALGSGVKDLVPDESTGGDD 259
               F +  +G  ++VP + T   D
Sbjct: 827 ESMMFRSKFAGWDEIVPVDYTRTSD 851


>AL023844-7|CAA19532.1|  551|Caenorhabditis elegans Hypothetical
           protein Y48A6B.8 protein.
          Length = 551

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 1/130 (0%)

Query: 147 NAGAQKRMFQVKGKRDVRVRQVDPQIASMNKGDVFVLDLDNDIYVFVGEKAKNVEKLKAI 206
           N    +    ++ KR+    ++ P   S     V     ++D Y         +  +K +
Sbjct: 15  NENTPRSTRSIRHKREDPRGKMKPLATSTRTSSVNKKKKNDDDYENFYSGENTITTMKPV 74

Query: 207 SFANQVRDQDHHGRGRVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNE 266
            F  +    +H      DI D+   +    + +   G+G +D V +E  G ++QE E N 
Sbjct: 75  VFPKKPVIFEHGYGIEDDIEDEIDDEELDDEEYEESGNGNEDEV-EEEVGVEEQEIENNF 133

Query: 267 ASNVILSEVS 276
           A   + SE+S
Sbjct: 134 AYKKVKSEIS 143


>AL132948-44|CAD31830.2|  410|Caenorhabditis elegans Hypothetical
           protein Y39B6A.38 protein.
          Length = 410

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 231 SDVDVQKFFTALGSGVKDLVPDESTGGDDQEFER 264
           S+ DV+ FF+ +G  + DL+ +E    D Q  ER
Sbjct: 328 SEEDVKSFFSKIGHQIDDLIGEEIQATDGQGIER 361


>U88311-8|AAB42341.2|  918|Caenorhabditis elegans Hypothetical
           protein C10H11.1 protein.
          Length = 918

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 154 MFQVKGKRDVRVRQVDPQIASMNKGDVFVLDLDNDIYVFVGEKAKNVEKLKA 205
           + QV+G ++V VR V P ++S+++   FV+     +  + G  +  +EK KA
Sbjct: 221 LIQVRGSKNVDVRLVAPAMSSVHEVACFVVVHQKHLMKYEGLYSNILEKTKA 272


>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 3 protein.
          Length = 1142

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 9/110 (8%)

Query: 175 MNKGDVFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGRVDIVDKYSSDVD 234
           ++K   FVLDLD+ +  +  ++A       AI F + + ++    R    ++D   S +D
Sbjct: 432 VSKWQSFVLDLDHLVSKYSTDQA-------AIYFVSNLNNKGCRKRLVKLMIDPPPSRID 484

Query: 235 VQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKV 284
           V  F+  L + +++++PD +T    Q  E+      +  + S AT  IKV
Sbjct: 485 VVPFYARLVATLENVMPDLTTEIVTQLLEK--FRGFLQQKPSSATAIIKV 532


>Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical
           protein F49C5.3 protein.
          Length = 551

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 147 NAGAQKRMFQVKGKRDVRVRQVDPQIASMNKGDVFVLDLDNDIYVFVGEKAKNVEKLKAI 206
           N    +    ++ KR+    ++ P   S     V     ++D Y         +  +K +
Sbjct: 15  NENTPRSTRSIRHKREDPRGKMKPLATSTRTSSVNKKKKNDDDYENFYSGEYTITTMKPV 74

Query: 207 SFANQVRDQDHHGRG-RVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERN 265
            F  + +    HG G   DI D+   +    + +   G+G +D V +E    ++QE E N
Sbjct: 75  VFPKK-KVIFEHGYGIEDDIEDEIDDEESDDEEYEESGNGSEDEV-EEEVRVEEQEIENN 132

Query: 266 EASNVILSEVS 276
            A   + SE+S
Sbjct: 133 FAYKKVKSEIS 143


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 14/159 (8%)

Query: 152 KRMFQVKGKRDVRVRQVDPQ-IASMNKGDVFVLDL-DNDIYVFVGEKAKNVEKLKAISFA 209
           +R+ ++K + D  ++Q++   +A  ++G +  LDL D+D     G   +N  K       
Sbjct: 79  ERLEKIKPEND-HIQQMESLFLAGASEGQLPQLDLQDDDFEEMFGFSVENDNKKYRYGDE 137

Query: 210 NQVRDQDH-----HGRGRVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFER 264
            +     H       RG VD+VD    D D     T + S +  +VP         E +R
Sbjct: 138 EKPEPMFHLQEPSTSRGHVDVVDLTLDDSDDDCLITDVKSVMPQVVPGRRMRWAQAEKDR 197

Query: 265 NEASNVILSEVSDATGKIKVTPLSKPFKQENLSPQEKSQ 303
            +A  +      D    I+   L K    ++L   EK +
Sbjct: 198 IDADQM------DIQHNIEARRLKKMRSAKDLESTEKKE 230


>AL031630-14|CAA20993.1|  185|Caenorhabditis elegans Hypothetical
           protein Y38H6C.15 protein.
          Length = 185

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 241 ALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGK-IKVTPLSKPFKQENLSPQ 299
           ++G   +D  P+     +D++ E  +++   LS+ SD T K   V+   KP K E L+ +
Sbjct: 63  SVGKDTQD--PNMPPNKEDKKPESKKSAEK-LSKKSDKTKKKTTVSSEDKPEKPEKLTEE 119

Query: 300 EKSQAMTKAQE 310
           EK +   KA+E
Sbjct: 120 EKPKEKEKAKE 130


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.132    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,741,914
Number of Sequences: 27539
Number of extensions: 368629
Number of successful extensions: 959
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 21
length of query: 353
length of database: 12,573,161
effective HSP length: 82
effective length of query: 271
effective length of database: 10,314,963
effective search space: 2795354973
effective search space used: 2795354973
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)