Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001754-TA|BGIBMGA001754-PA|IPR007122|Gelsolin,
IPR007123|Gelsolin region
         (527 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   2.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   8.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 91  SAVQHREVQYYESKEFLEYFSPEDF--ERSHFYSSIVGWGAGIYGCQIA 137
           S V+ RE   +  +E + Y +P      R H Y+S+VG   GIY   +A
Sbjct: 590 STVEEREE--FRRQERMRYAAPHKAFTYRMHGYASVVGPVKGIYQHNVA 636


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 38  FYSGDSYIVLNTTGDKDRLTWDIHF 62
           F  GD+ I +N    K+++ WD  F
Sbjct: 666 FQPGDTIICINIKRQKEKIEWDPGF 690


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 83  LDDEQFQGSAVQHREVQYYESKEFL--EYFSPEDFERSHFYSSIVGWGAGIYGCQIALTE 140
           +D EQF     +   VQY  S++ L  + F     +    +  +VG  +GI  C +   +
Sbjct: 281 VDTEQFSNPQYEENNVQYEGSQDILNTQSFGKVVSKNGVLFLGLVG-NSGI-AC-VNEHQ 337

Query: 141 LLIRETFPAI 150
           +L RE+F  +
Sbjct: 338 VLQRESFDVV 347


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,665
Number of Sequences: 429
Number of extensions: 6312
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 527
length of database: 140,377
effective HSP length: 61
effective length of query: 466
effective length of database: 114,208
effective search space: 53220928
effective search space used: 53220928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)